ANGEL1 (angel homolog 1) - Rat Genome Database

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Gene: ANGEL1 (angel homolog 1) Chlorocebus sabaeus
Analyze
Symbol: ANGEL1
Name: angel homolog 1
RGD ID: 18671842
Description: ENCODES a protein that exhibits 3'-5'-RNA exonuclease activity (inferred); catalytic activity (inferred); eukaryotic initiation factor 4E binding (inferred); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN mitochondrial outer membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein angel homolog 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12454,051,349 - 54,102,050 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2454,048,757 - 54,079,273 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605342,250,665 - 42,291,308 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ANGEL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12454,051,349 - 54,102,050 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2454,048,757 - 54,079,273 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605342,250,665 - 42,291,308 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ANGEL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381476,786,009 - 76,812,882 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1476,781,733 - 76,826,246 (-)EnsemblGRCh38hg38GRCh38
GRCh371477,252,352 - 77,279,225 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361476,323,339 - 76,348,983 (-)NCBINCBI36Build 36hg18NCBI36
Build 341476,323,338 - 76,348,983NCBI
Celera1457,292,199 - 57,317,888 (-)NCBICelera
Cytogenetic Map14q24.3NCBI
HuRef1457,422,206 - 57,447,959 (-)NCBIHuRef
CHM1_11477,191,408 - 77,217,104 (-)NCBICHM1_1
T2T-CHM13v2.01470,995,319 - 71,022,310 (-)NCBIT2T-CHM13v2.0
Angel1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391286,740,185 - 86,781,075 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1286,747,276 - 86,780,995 (-)EnsemblGRCm39 Ensembl
GRCm381286,699,719 - 86,734,303 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1286,700,502 - 86,726,460 (-)EnsemblGRCm38mm10GRCm38
MGSCv371288,041,452 - 88,067,410 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361287,589,605 - 87,625,425 (-)NCBIMGSCv36mm8
Celera1288,162,457 - 88,188,512 (-)NCBICelera
Cytogenetic Map12D2NCBI
cM Map1240.86NCBI
Angel1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86112,080,074 - 112,117,178 (-)NCBIGRCr8
mRatBN7.26106,349,125 - 106,386,202 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6106,349,126 - 106,386,209 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6106,517,892 - 106,543,458 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06106,816,745 - 106,842,312 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06106,186,400 - 106,211,968 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06110,644,327 - 110,681,397 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6110,644,267 - 110,681,408 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06119,941,589 - 119,978,472 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46110,825,006 - 110,850,916 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16110,828,535 - 110,854,396 (-)NCBI
Celera6104,171,806 - 104,197,441 (-)NCBICelera
Cytogenetic Map6q31NCBI
Angel1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955438776,213 - 797,948 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955438776,213 - 805,020 (-)NCBIChiLan1.0ChiLan1.0
ANGEL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21577,871,161 - 77,910,190 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11477,088,826 - 77,126,697 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01457,340,811 - 57,368,871 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11476,548,480 - 76,597,123 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1476,550,463 - 76,573,624 (-)Ensemblpanpan1.1panPan2
ANGEL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1849,655,243 - 49,696,897 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl849,656,854 - 49,750,707 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha849,339,104 - 49,385,267 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0849,882,024 - 49,928,223 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl849,881,238 - 49,927,864 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1849,551,960 - 49,593,799 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0849,575,137 - 49,616,791 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0849,973,262 - 50,014,928 (-)NCBIUU_Cfam_GSD_1.0
Angel1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864026,343,706 - 26,369,599 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364885,698,905 - 5,718,114 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364885,699,365 - 5,717,984 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANGEL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl799,930,684 - 99,959,417 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1799,929,401 - 99,959,441 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27105,991,733 - 105,999,661 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Angel1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473425,007,642 - 25,030,836 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473424,911,217 - 25,046,138 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000010029   ⟹   ENSCSAP00000008131
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2454,048,757 - 54,079,273 (-)Ensembl
RefSeq Acc Id: XM_007987375   ⟹   XP_007985566
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12454,051,349 - 54,074,653 (-)NCBI
Vero_WHO_p1.0NW_02366605342,250,665 - 42,274,033 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007987376   ⟹   XP_007985567
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12454,051,349 - 54,078,480 (-)NCBI
Vero_WHO_p1.0NW_02366605342,250,665 - 42,277,374 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007987377   ⟹   XP_007985568
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12454,051,349 - 54,077,588 (-)NCBI
Vero_WHO_p1.0NW_02366605342,250,665 - 42,276,761 (-)NCBI
Sequence:
RefSeq Acc Id: XM_037984309   ⟹   XP_037840237
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605342,250,665 - 42,291,308 (-)NCBI
RefSeq Acc Id: XM_037984310   ⟹   XP_037840238
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605342,250,665 - 42,276,560 (-)NCBI
Protein Sequences
Protein RefSeqs XP_007985566 (Get FASTA)   NCBI Sequence Viewer  
  XP_007985567 (Get FASTA)   NCBI Sequence Viewer  
  XP_007985568 (Get FASTA)   NCBI Sequence Viewer  
  XP_037840237 (Get FASTA)   NCBI Sequence Viewer  
  XP_037840238 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000008131.1
RefSeq Acc Id: XP_007985567   ⟸   XM_007987376
- Peptide Label: isoform X3
- UniProtKB: A0A0D9RHP2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007985568   ⟸   XM_007987377
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RHP2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007985566   ⟸   XM_007987375
- Peptide Label: isoform X3
- UniProtKB: A0A0D9RHP2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000008131   ⟸   ENSCSAT00000010029
RefSeq Acc Id: XP_037840237   ⟸   XM_037984309
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RHP2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037840238   ⟸   XM_037984310
- Peptide Label: isoform X3
- UniProtKB: A0A0D9RHP2 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000011939 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000010029.1 UniProtKB/TrEMBL
Gene3D-CATH 3.60.10.10 UniProtKB/TrEMBL
InterPro CCR4/nocturin_mRNA_transcr UniProtKB/TrEMBL
  Endo/exonu/phosph_ase_sf UniProtKB/TrEMBL
  Endo/exonuclease/phosphatase UniProtKB/TrEMBL
KEGG Report csab:103229377 UniProtKB/TrEMBL
NCBI Gene ANGEL1 ENTREZGENE
PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 UniProtKB/TrEMBL
  PROTEIN ANGEL HOMOLOG 1 UniProtKB/TrEMBL
Pfam Exo_endo_phos UniProtKB/TrEMBL
Superfamily-SCOP SSF56219 UniProtKB/TrEMBL
UniProt A0A0D9RHP2 ENTREZGENE, UniProtKB/TrEMBL