Angel1 (angel homolog 1) - Rat Genome Database

Name: Angel1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| FTP Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References FTP Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Genome Scanner Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

Gene: Angel1 (angel homolog 1) Rattus norvegicus

Analyze

Symbol:

Angel1

Name:

angel homolog 1

RGD ID:

1306238

Description:

Predicted to have 3'-5'-exoribonuclease activity; eukaryotic initiation factor 4E binding activity; and protein domain specific binding activity. Predicted to be involved in RNA phosphodiester bond hydrolysis, exonucleolytic. Predicted to localize to several cellular components, including cis-Golgi network; endoplasmic reticulum; and perinuclear region of cytoplasm. Orthologous to human ANGEL1 (angel homolog 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; methamphetamine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

angel homolog 1 (Drosophila); LOC362765; protein angel homolog 1; RGD1306238; similar to RIKEN cDNA 1110030H02

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ANGEL1 (angel homolog 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Angel1 (angel homolog 1)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Angel1 (angel homolog 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ANGEL1 (angel homolog 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ANGEL1 (angel homolog 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Angel1 (angel homolog 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ANGEL1 (angel homolog 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	ANGEL1 (angel homolog 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Angel1 (angel homolog 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ANGEL1 (angel homolog 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Mus musculus (house mouse):	Angel1 (angel homolog 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Danio rerio (zebrafish):	angel1 (angel homolog 1 (Drosophila))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Drosophila melanogaster (fruit fly):	angel	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Caenorhabditis elegans (roundworm):	angl-1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	6	106,349,125 - 106,386,202 (-)	NCBI
Rnor_6.0 Ensembl	6	110,644,267 - 110,681,408 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	6	110,644,327 - 110,681,397 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	6	119,941,589 - 119,978,472 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	110,825,006 - 110,850,916 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	6	110,828,535 - 110,854,396 (-)	NCBI
Celera	6	104,171,806 - 104,197,441 (-)	NCBI		Celera
Cytogenetic Map	6	q31	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

intellectual disability (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

aflatoxin B1 (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

disodium selenite (ISO)

doxorubicin (ISO)

ethanol (ISO)

methamphetamine (EXP)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

RNA phosphodiester bond hydrolysis, exonucleolytic (IEA)

Cellular Component

cis-Golgi network (IEA,ISO,ISS)

cytosol (IEA,ISO,ISS)

endoplasmic reticulum (IEA,ISO,ISS)

nucleus (IEA,ISO,ISS)

perinuclear region of cytoplasm (IEA,ISO,ISS)

Molecular Function

3'-5'-exoribonuclease activity (IBA)

eukaryotic initiation factor 4E binding (IEA,ISO,ISS)

protein domain specific binding (IEA,ISO,ISS)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	MGD data from the GO Consortium
3.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:23814182

Genomics

Comparative Map Data

Angel1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	6	106,349,125 - 106,386,202 (-)	NCBI
Rnor_6.0 Ensembl	6	110,644,267 - 110,681,408 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	6	110,644,327 - 110,681,397 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	6	119,941,589 - 119,978,472 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	110,825,006 - 110,850,916 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	6	110,828,535 - 110,854,396 (-)	NCBI
Celera	6	104,171,806 - 104,197,441 (-)	NCBI		Celera
Cytogenetic Map	6	q31	NCBI

ANGEL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	14	76,786,009 - 76,826,246 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38.p13 Ensembl	14	76,786,168 - 76,826,246 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	14	76,786,009 - 76,812,882 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	14	77,252,352 - 77,279,225 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
GRCh37	14	77,248,076 - 77,292,606 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	76,323,339 - 76,348,983 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	14	76,323,338 - 76,348,983	NCBI
Celera	14	57,292,199 - 57,317,888 (-)	NCBI
Cytogenetic Map	14	q24.3	NCBI
HuRef	14	57,422,206 - 57,447,959 (-)	NCBI		HuRef
CHM1_1	14	77,191,408 - 77,217,104 (-)	NCBI		CHM1_1

Angel1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	86,740,185 - 86,781,075 (-)	NCBI	GRCm39		mm39
GRCm38	12	86,699,719 - 86,734,303 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	86,700,502 - 86,726,460 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	88,041,452 - 88,067,410 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	12	87,589,605 - 87,625,425 (-)	NCBI			mm8
Celera	12	88,162,457 - 88,188,512 (-)	NCBI		Celera
Cytogenetic Map	12	D2	NCBI

Angel1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955438	776,213 - 797,948 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955438	776,213 - 805,020 (-)	NCBI	ChiLan1.0	ChiLan1.0

ANGEL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	14	76,548,480 - 76,597,123 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	76,550,463 - 76,573,624 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	14	57,340,811 - 57,368,871 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

ANGEL1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	8	49,656,854 - 49,750,707 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	8	49,655,243 - 49,696,897 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Angel1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936488	5,699,365 - 5,717,984 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ANGEL1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	99,930,677 - 99,973,775 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	99,929,401 - 99,959,441 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	105,991,733 - 105,999,661 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ANGEL1
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	54,051,349 - 54,102,050 (-)	NCBI
ChlSab1.1 Ensembl	24	54,048,757 - 54,079,273 (-)	Ensembl

Angel1
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624734	24,911,217 - 25,046,138 (+)	NCBI

Position Markers

RH136761

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	6	110,644,380 - 110,644,528	NCBI	Rnor6.0
Rnor_5.0	6	119,941,642 - 119,941,790	UniSTS	Rnor5.0
RGSC_v3.4	6	110,825,058 - 110,825,206	UniSTS	RGSC3.4
Celera	6	104,171,858 - 104,172,006	UniSTS
Cytogenetic Map	6	q31	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1576309	Emca7	Estrogen-induced mammary cancer QTL 7	4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	2537030	111715717	Rat
4145119	Mcs25	Mammary carcinoma susceptibility QTL 25		0.0001	mammary gland integrity trait (VT:0010552)	ratio of deaths to total study population during a period of time (CMO:0001023)	6	7009971	115379601	Rat
12801471	Schws9	Schwannoma susceptibility QTL 9			nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	66129520	111129520	Rat
731173	Uae22	Urinary albumin excretion QTL 22	10.1		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	68781170	147991367	Rat
2290393	Uae37	Urinary albumin excretion QTL 37		0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	68781170	147991367	Rat
1641904	Alcrsp4	Alcohol response QTL 4			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	6	71206251	116206251	Rat
1300075	Glom7	Glomerulus QTL 7	5.6	0.0000002	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	6	75449871	120449871	Rat
1331789	Rf37	Renal function QTL 37	3.224		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	6	75623277	120276465	Rat
70196	BpQTLcluster7	Blood pressure QTL cluster 7	6.82		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	6	75623277	120623277	Rat
724536	Uae7	Urinary albumin excretion QTL 7	3.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	6	75623277	136143011	Rat
1331799	Bp211	Blood pressure QTL 211	3.66407		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	75623277	136426962	Rat
1581550	Pur8	Proteinuria QTL 8			total urine protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	6	75623393	136142742	Rat
1581563	Uae33	Urinary albumin excretion QTL 33			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	75623393	136142742	Rat
724524	Uae2	Urinary albumin excretion QTL 2	2.7	0.0005	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	76902247	114203334	Rat
737827	Hcar11	Hepatocarcinoma resistance QTL 11	4.4		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	6	86422697	115379601	Rat
1576302	Schws4	Schwannoma susceptibility QTL 4		0.0078	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	87418448	111129520	Rat
738034	Anxrr5	Anxiety related response QTL 5	5.9		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	6	88507712	133507712	Rat
724513	Uae14	Urinary albumin excretion QTL 14	6.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	88996335	139410483	Rat
10054138	Gmadr3	Adrenal mass QTL 3	3.68	0.00045	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	6	89631358	134631358	Rat
10054123	Srcrt6	Stress Responsive Cort QTL 6	2.5	0.0043	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	89631358	134631358	Rat
1300076	Glom8	Glomerulus QTL 8	7	0.000000009	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)	6	91703409	136703409	Rat
2303624	Vencon5	Ventilatory control QTL 5	4.45		respiration trait (VT:0001943)	minute ventilation (VE) (CMO:0000132)	6	92879510	137879510	Rat
1331722	Thshl1	Thyroid stimulating hormone level QTL 1	11.7	0.0001	blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	6	93706176	111134673	Rat
1331725	Bp212	Blood pressure QTL 212	3.52475		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	97949772	133849286	Rat
12801411	Schws8	Schwannoma susceptibility QTL 8			nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	99273921	144273921	Rat
61414	Pia3	Pristane induced arthritis QTL 3	4.5		joint integrity trait (VT:0010548)	post-insult time to onset of experimental arthritis (CMO:0001450)	6	99273921	144792678	Rat
8552796	Vie3	Viral induced encephalitis QTL 3	2.6		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	6	101207574	147991367	Rat
1358355	Srcrt4	Stress Responsive Cort QTL 4	6.39		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	104363890	147991367	Rat
2313399	Anxrr28	Anxiety related response QTL 28			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	6	104381930	138066274	Rat
1331797	Bp213	Blood pressure QTL 213	3.291		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	108154445	133849286	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	587
Count of miRNA genes:	266
Interacting mature miRNAs:	314
Transcripts:	ENSRNOT00000014635
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		2	2	2		2			14	18	31
Low	3	41	55	39	19	39	8	11	60	17	10	11	8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108717	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240392	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764815	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594229	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112514	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112516	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112517	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC166827	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000166	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000014635 ⟹ ENSRNOP00000014635

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	6	110,644,328 - 110,669,910 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000078265 ⟹ ENSRNOP00000072809

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	6	110,644,267 - 110,681,408 (-)	Ensembl

RefSeq Acc Id:

NM_001108717 ⟹ NP_001102187

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	106,349,126 - 106,374,707 (-)	NCBI
Rnor_6.0	6	110,644,328 - 110,669,910 (-)	NCBI
Rnor_5.0	6	119,941,589 - 119,978,472 (-)	NCBI
RGSC_v3.4	6	110,825,006 - 110,850,916 (-)	RGD
Celera	6	104,171,806 - 104,197,441 (-)	RGD

Sequence:

show sequence

GCCGAACAGAGGAGACCGGTGTGCAGCAGTGTGGAGGGGCGGCGGCGCGGGCAGGCGGCCGGCC
ATGATCGCGTCGTGCCTATATTACCTGCTGCTGCCGGCCGCGCGCCTCTTCCGCTTCCTCTCAG
ATGCTTTCTTTACATGTCGAAAAAATGCCCTTCTGGCGAAGAGCTCGTCCCCCCAGGTAGAGGG
TAACTTTGCCATGGCCCCTCGGGGGCCTGACCAAGAGGAGTGTGAGGGCCTGCTTCAGCAGTGG
CGAGAAGAAGGGTGGAACCAGACACTCTCAACTGCAAGTGAGGGTCCTCTTGCAGATAAGGGAC
TGGCTGAGAGCAGCCTGGCCCTCCTGATGGATAACTCTGGAGAACAGGACACTGCCTCGGAGGA
CAAGTGGTCCAGCAGGCAGCTGAGTGACCTTCGGGCAGCGGACAACCTGGACCAGCCTTTCCCT
GAGGTGCTAGGGGAGGAACCTCTGGCCGAGGATGAGGGTCCTTTGTGGGCAGCTGTTCCCGTAC
AGACAGGGCCCCAGTATGCAGACTGTGCTGTTCTCCCAATGGGTGCAATGGCTGCAGAACAATG
GGAAGAGGACCCTGCAATGGTGGCCTGGAGCATAGCACCGGAGCCTATGCCCCAGGAAGAGACT
TCCATGTGGCCCTTTGAAGGCCTGGAACAGCTGCAGCCTCCCCCAATGGAAATACCTTATCATG
AAATCCTGTGGCGAGAATGGGAGGATTTCTCCACGCAGCCAGATGCTCAGGGTCTGGAGGCAGG
AGATGGCCCTCAGTTCCAGTTCACTCTGATGTCGTATAATATCCTGGCCCAGGATCTGATGCAG
CAGAGCTCAGAGCTCTATCTGCATTGCCATCCAGACATCCTCAACTGGAATTACCGCTTTGCCA
ACCTCATGCAGGAATTCCAGCACTGGGACCCGGATATCCTGTGCCTTCAGGAAGTCCAGGAAGA
CCATTACTGGGAGCAGCTGGAGCCCTCTCTGCGGATGATGGGCTTCACCTGTTTTTACAAGAGG
AGGACTGGGTGTAAAACGGATGGCTGCGCTGTGTGCTACAAGCCCACCAGGTTCCGTCTGCTGT
GTGCCAGCCCTGTGGAGTACTTCCGGCCTGGGTTGGAGCTCCTCAATCGGGACAATGTGGGCTT
AGTGTTGCTGCTGCAGCCGCTGGTGCCAGAAGGTCTGGGGCAAGTCTCAGTGGCTCCCCTGTGT
GTGGCAAATACCCATGTCCTGTACAACCCACGTCGGGGTGATGTCAAGCTGGCCCAGATGGCCA
TTCTTCTGGCCGAGGTGGACAAGGTGGCCAGGTTGTCAGATGGCAGCCACTGCCCTATCATCTT
GTGTGGGGACCTGAATTCTGTCCCTGATTCACCTCTCTACAACTTCATCAGGGATGGAGAGCTC
CAGTACAATGGGATGCCAGCCTGGAAGGTTTCTGGACAGGAAGACTTCTCTCATCAGCTTTACC
AGAGGAAGCTGCAGGCCCCATTGTGGCCCAGCTCCCTGGGCATCACTGATTGCTGTCAATATGT
CACCTCCTGTCATCCCAAGAGATCAGAGAGACTAAAATATGGCCGAGACTTCCTACTACGATTC
CGCTTCTGCGACCTCGCTTGTCAGCGACCAGTAGGACTGGTTCTCATGGAAGGAGTGACAGACA
CTAAGCCAGATCGACCTGCTGGTTGGGCCGAGTGTATCTTTGAGGAAGAGATATCTGAACTTGA
GCCTGTCTTCCCCAGGACTATAGGCACCATCCAGCACTGCCTCCACCTGACCTCAGTATATACC
CATTTCCTGCCCCAGCACGGCCGCCCGGAGGTCACGACGATGCCCTTAGGTCTTGGGATGACAG
TGGATTACATTTTTTTCTCAGCTGAGTCCTGTGAGAATGAGAACAGAAGTGATCACAGGTTGGA
TCGAGATGGAACCCTCAAGCTCCTGGGCCGCCTCTCCCTCCTCTCTGAAGAGATTCTCTGGGCG
GCCAATGGCTTGCCCAACCCGTTCTACTCTTCAGACCATCTCTGCTTGCTTGCCAGCTTCGGCA
TGGAAGTCACTGCCCCATGAGGGCCCCCAGGGAAAGAGCTCACTGGACCGACGACTGCAAATGC
CCCGTGCTGTGGAAACTTATGCCCCTTCCCTTGTTCCCTCCTGCCCGTGGTTAGACTTTCTCCA
GGCCTGTCCACGTTCTCGGCCTGTGGTCCCTGCCCTGCCCCAACCTCTTCCTAATCCTGTGCCA
CATGCTAGGTGGCCCCGGGAGAGGTAGAGAGCATCCCCTTTCTTCTGTGTACCCAGCGCCCCCT
TCCCCCCCATTGATTTTTAATGACCAGGGTTGCGGGAGTTATTGATCTCATTGGTTATTCGCTT
TAGGCCATTTCTTGGTGGCACCCTCTGACCCAACCTTCCCCTTCCTTTCATGACCTCTGGGCTC
TGGCATGCACATGCAAGGTGTGTGTAAAGCATGAGTTCTCTTGGGGTGGGACTGCCCAGCACAG
CCAAGCCTGCTTCTGCCTAGTCCATGTGCCACCATGAGGTACTGGACTAGGGGCAGGTGGAGAG
CATGATGTAGTAGCTGTGTGCTGCCAGGAGGCAGCAAGCAGGGGCCCTTTTCTCCCAGTCAGTC
ATCTAGGCATCCTGGGCACACTTGTTATTTCTGGAGACAAACTGGCCCACAGCCTGGAGCGGTA
GCCCAGGGATACCCCACACCTCTGATCTCCTCACTGACTTCCTTGAGGAAGGCGGTTGATGCCT
TGTGCTGGGGCTCGCTGGGCTGGCACAGTGCTGGGAGGCTTTAAGGATGAGGAGACTCCACCTT
CAGGGAACTGTTGTCTCACCAGACTGAGGAACTGGGTAAGAGGCGGAGCCCGGTAGAAAGAGCA
GGAGGCTCTACAGCCTTAGCCAGCACTGGAGCCCCAGAGGGCTTGACCTCTGACCTCTGTGCAC
CTAAGAAAGTTTCTTTGCTTCTTCTCCCCACCCACCCCCACCCCCTCTTGTTCCCTTCCATTTT
CTCTCCGGAGAAGCGTGCTGTTTAGCTCAGGCCAAAACATCTCAACAGAAGCCTGGCTTTGGGC
ACACTAGGTCTAAGAACTCAGGGTGGCAGTGCTTACTCATTTGCTCTGCCTTTCCTCCCCAAAA
GTGGGCTCCCTAACCTACAGAAAACCCCTGTAGCCCAAACCATGTCACCTGCATGCCTTATTCA
GTGCTGGGGTACAGCCTAGGGTGTCCTTGGGCCAGATCCTCCACACAGCTTTAACTCAAAATAT
CTGCTGGCCCTAGTTGGGAGGGAATTGACTGAGGCTGGAGTTAGGCTTGGTGGACCAGGAGCCC
CATTCTTCCCTTGATTTGGAAGCCAAAAACCCAGCTGGAACGCTGCTGCTGCACTGCTGACTCT
CAGCTTCCCATGCTCAGGTCTGGGGACTTCTTGTCCTGTGTGTGTCTATTTTAAGTTTTGTTCT
CTGGGTACTGGGCATCTGCCTGTCTGAGCCCCAGGCCCATCTGCCCACAACCCACTTTTCTCTG
TCACTCTCTGGGCACCTCCTGAGATGGCCCCACAGCTGAGCCCTGCTGGTTCTCAGAACAGGGC
CAATGATTGTTCCCTCTGCCAGGAAATGCAGGGTCAACTGCTAAAGAAGGTGGAGGCCCAGAGC
TTGATGGTTTATCTTTTCCTTGTTTCTCCTTTGTTTCTGTTTTAGAAATGAAGTGTGGGGGTTT
AAATGGCATTTAAGCTGTACCCTGGAGCCGGCAGAACCAGGCAACGTTTTTTTCAAATAAAGGC
TTATCATGCCCCCT

hide sequence

RefSeq Acc Id:

XM_006240392 ⟹ XP_006240454

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	106,349,125 - 106,386,202 (-)	NCBI
Rnor_6.0	6	110,644,327 - 110,681,397 (-)	NCBI
Rnor_5.0	6	119,941,589 - 119,978,472 (-)	NCBI

Sequence:

show sequence

GGCCTCCCACCCTTTTGGTGGCTCTGGTGGTCATCTTTTCTCATATGTTTGCTGGGTCTAAGCC
CAGACTTGGCTGTGAGTGCTCGGGTGCTGTAGGAGGGCCTCTTAGTGACAGCCTAATTCCTTCT
GAGTTAGCACCAACCCCAAGGCTCCTAGTCAGGTGACTGTGAAGCGCCGCCACCATGTTTTTTT
CTCAAGGTGGCTGCGCTTCAGGTACGAAGTATTTCAGTGATGGGTGAAGTCAGGTTTCTTCTAC
CCAGTTCGTCCTTTTTGCTCGCACCCGTGGGAGAGCATCCTCGACCTTGGCACAGAAGAACAAA
AATCAAAGCACCACAAGCATATGTCCTATCAGCACGGTTCGTTGCTACCCCAGCATTGCTCACG
CCAGACTCCTAAGCTGTTTAACTTGAGGCCAGCATTCCCCACTCAGCTGTGCTCGCATGTGGAG
TTGAAGTTCACTCGAGGTGCAGTGTCGAGAGATCCCAAGGGCTTGTCCATTGTTCCTTGATTAA
GGCTTCAGGGCGTCAACAGTCAGTTCGTCAGTATTATGATGTATCCAGCTGGTCCAGGATCTGG
TGACTCCCCAGAGGGCTTCCCTGAACAGCCAAGGCTCCAGTCACAAATTGGAAACGGCGCAGCT
CAGACACTGGATGCTTTCTTTACATGTCGAAAAAATGCCCTTCTGGCGAAGAGCTCGTCCCCCC
AGGTAGAGGGTAACTTTGCCATGGCCCCTCGGGGGCCTGACCAAGAGGAGTGTGAGGGCCTGCT
TCAGCAGTGGCGAGAAGAAGGGTGGAACCAGACACTCTCAACTGCAAGTGAGGGTCCTCTTGCA
GATAAGGGACTGGCTGAGAGCAGCCTGGCCCTCCTGATGGATAACTCTGGAGAACAGGACACTG
CCTCGGAGGACAAGTGGTCCAGCAGGCAGCTGAGTGACCTTCGGGCAGCGGACAACCTGGACCA
GCCTTTCCCTGAGGTGCTAGGGGAGGAACCTCTGGCCGAGGATGAGGGTCCTTTGTGGGCAGCT
GTTCCCGTACAGACAGGGCCCCAGTATGCAGACTGTGCTGTTCTCCCAATGGGTGCAATGGCTG
CAGAACAATGGGAAGAGGACCCTGCAATGGTGGCCTGGAGCATAGCACCGGAGCCTATGCCCCA
GGAAGAGACTTCCATGTGGCCCTTTGAAGGCCTGGAACAGCTGCAGCCTCCCCCAATGGAAATA
CCTTATCATGAAATCCTGTGGCGAGAATGGGAGGATTTCTCCACGCAGCCAGATGCTCAGGGTC
TGGAGGCAGGAGATGGCCCTCAGTTCCAGTTCACTCTGATGTCGTATAATATCCTGGCCCAGGA
TCTGATGCAGCAGAGCTCAGAGCTCTATCTGCATTGCCATCCAGACATCCTCAACTGGAATTAC
CGCTTTGCCAACCTCATGCAGGAATTCCAGCACTGGGACCCGGATATCCTGTGCCTTCAGGAAG
TCCAGGAAGACCATTACTGGGAGCAGCTGGAGCCCTCTCTGCGGATGATGGGCTTCACCTGTTT
TTACAAGAGGAGGACTGGGTGTAAAACGGATGGCTGCGCTGTGTGCTACAAGCCCACCAGGTTC
CGTCTGCTGTGTGCCAGCCCTGTGGAGTACTTCCGGCCTGGGTTGGAGCTCCTCAATCGGGACA
ATGTGGGCTTAGTGTTGCTGCTGCAGCCGCTGGTGCCAGAAGGTCTGGGGCAAGTCTCAGTGGC
TCCCCTGTGTGTGGCAAATACCCATGTCCTGTACAACCCACGTCGGGGTGATGTCAAGCTGGCC
CAGATGGCCATTCTTCTGGCCGAGGTGGACAAGGTGGCCAGGTTGTCAGATGGCAGCCACTGCC
CTATCATCTTGTGTGGGGACCTGAATTCTGTCCCTGATTCACCTCTCTACAACTTCATCAGGGA
TGGAGAGCTCCAGTACAATGGGATGCCAGCCTGGAAGGTTTCTGGACAGGAAGACTTCTCTCAT
CAGCTTTACCAGAGGAAGCTGCAGGCCCCATTGTGGCCCAGCTCCCTGGGCATCACTGATTGCT
GTCAATATGTCACCTCCTGTCATCCCAAGAGATCAGAGAGACTAAAATATGGCCGAGACTTCCT
ACTACGATTCCGCTTCTGCGACCTCGCTTGTCAGCGACCAGTAGGACTGGTTCTCATGGAAGGA
GTGACAGACACTAAGCCAGATCGACCTGCTGGTTGGGCCGAGTGTATCTTTGAGGAAGAGATAT
CTGAACTTGAGCCTGTCTTCCCCAGGACTATAGGCACCATCCAGCACTGCCTCCACCTGACCTC
AGTATATACCCATTTCCTGCCCCAGCACGGCCGCCCGGAGGTCACGACGATGCCCTTAGGTCTT
GGGATGACAGTGGATTACATTTTTTTCTCAGCTGAGTCCTGTGAGAATGAGAACAGAAGTGATC
ACAGGTTGGATCGAGATGGAACCCTCAAGCTCCTGGGCCGCCTCTCCCTCCTCTCTGAAGAGAT
TCTCTGGGCGGCCAATGGCTTGCCCAACCCGTTCTACTCTTCAGACCATCTCTGCTTGCTTGCC
AGCTTCGGCATGGAAGTCACTGCCCCATGAGGGCCCCCAGGGAAAGAGCTCACTGGACCGACGA
CTGCAAATGCCCCGTGCTGTGGAAACTTATGCCCCTTCCCTTGTTCCCTCCTGCCCGTGGTTAG
ACTTTCTCCAGGCCTGTCCACGTTCTCGGCCTGTGGTCCCTGCCCTGCCCCAACCTCTTCCTAA
TCCTGTGCCACATGCTAGGTGGCCCCGGGAGAGGTAGAGAGCATCCCCTTTCTTCTGTGTACCC
AGCGCCCCCTTCCCCCCCATTGATTTTTAATGACCAGGGTTGCGGGAGTTATTGATCTCATTGG
TTATTCGCTTTAGGCCATTTCTTGGTGGCACCCTCTGACCCAACCTTCCCCTTCCTTTCATGAC
CTCTGGGCTCTGGCATGCACATGCAAGGTGTGTGTAAAGCATGAGTTCTCTTGGGGTGGGACTG
CCCAGCACAGCCAAGCCTGCTTCTGCCTAGTCCATGTGCCACCATGAGGTACTGGACTAGGGGC
AGGTGGAGAGCATGATGTAGTAGCTGTGTGCTGCCAGGAGGCAGCAAGCAGGGGCCCTTTTCTC
CCAGTCAGTCATCTAGGCATCCTGGGCACACTTGTTATTTCTGGAGACAAACTGGCCCACAGCC
TGGAGCGGTAGCCCAGGGATACCCCACACCTCTGATCTCCTCACTGACTTCCTTGAGGAAGGCG
GTTGATGCCTTGTGCTGGGGCTCGCTGGGCTGGCACAGTGCTGGGAGGCTTTAAGGATGAGGAG
ACTCCACCTTCAGGGAACTGTTGTCTCACCAGACTGAGGAACTGGGTAAGAGGCGGAGCCCGGT
AGAAAGAGCAGGAGGCTCTACAGCCTTAGCCAGCACTGGAGCCCCAGAGGGCTTGACCTCTGAC
CTCTGTGCACCTAAGAAAGTTTCTTTGCTTCTTCTCCCCACCCACCCCCACCCCCTCTTGTTCC
CTTCCATTTTCTCTCCGGAGAAGCGTGCTGTTTAGCTCAGGCCAAAACATCTCAACAGAAGCCT
GGCTTTGGGCACACTAGGTCTAAGAACTCAGGGTGGCAGTGCTTACTCATTTGCTCTGCCTTTC
CTCCCCAAAAGTGGGCTCCCTAACCTACAGAAAACCCCTGTAGCCCAAACCATGTCACCTGCAT
GCCTTATTCAGTGCTGGGGTACAGCCTAGGGTGTCCTTGGGCCAGATCCTCCACACAGCTTTAA
CTCAAAATATCTGCTGGCCCTAGTTGGGAGGGAATTGACTGAGGCTGGAGTTAGGCTTGGTGGA
CCAGGAGCCCCATTCTTCCCTTGATTTGGAAGCCAAAAACCCAGCTGGAACGCTGCTGCTGCAC
TGCTGACTCTCAGCTTCCCATGCTCAGGTCTGGGGACTTCTTGTCCTGTGTGTGTCTATTTTAA
GTTTTGTTCTCTGGGTACTGGGCATCTGCCTGTCTGAGCCCCAGGCCCATCTGCCCACAACCCA
CTTTTCTCTGTCACTCTCTGGGCACCTCCTGAGATGGCCCCACAGCTGAGCCCTGCTGGTTCTC
AGAACAGGGCCAATGATTGTTCCCTCTGCCAGGAAATGCAGGGTCAACTGCTAAAGAAGGTGGA
GGCCCAGAGCTTGATGGTTTATCTTTTCCTTGTTTCTCCTTTGTTTCTGTTTTAGAAATGAAGT
GTGGGGGTTTAAATGGCATTTAAGCTGTACCCTGGAGCCGGCAGAACCAGGCAACGTTTTTTTC
AAATAAAGGCTTATCATGCCCCCTA

hide sequence

RefSeq Acc Id:

XM_008764815 ⟹ XP_008763037

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	106,349,125 - 106,374,515 (-)	NCBI
Rnor_6.0	6	110,644,327 - 110,669,755 (-)	NCBI

Sequence:

show sequence

GAGCCGGGTCTGCCCCTATTGGGCTCCTGGGGCGGAGCGTCAGGCCGCATGACCGCAGTCCTCT
GCCAAGTGTGAGGTGGTCCGCGGGCCGTCCTGGCCCCACGAGGCTTGGGCTGACCGGCGACTCT
CGTGGGCAGCCCCTCCTCACGCTGTGGTCTGGTGACGTCGGGCCACGGTTAACGTGGACCCAGG
GCTGGGGAAGGGGGCGTCTTCCTTGGCTGTGGCGGTGGTCCTGGGGCAGGCTGAGACACTCCCG
GGGATCGGGAGCGGTGGCAACCCGGGACAGGCGAGGACCGGACTTCTCGGCGGATGCTTTCTTT
ACATGTCGAAAAAATGCCCTTCTGGCGAAGAGCTCGTCCCCCCAGGTAGAGGGTAACTTTGCCA
TGGCCCCTCGGGGGCCTGACCAAGAGGAGTGTGAGGGCCTGCTTCAGCAGTGGCGAGAAGAAGG
GTGGAACCAGACACTCTCAACTGCAAGTGAGGGTCCTCTTGCAGATAAGGGACTGGCTGAGAGC
AGCCTGGCCCTCCTGATGGATAACTCTGGAGAACAGGACACTGCCTCGGAGGACAAGTGGTCCA
GCAGGCAGCTGAGTGACCTTCGGGCAGCGGACAACCTGGACCAGCCTTTCCCTGAGGTGCTAGG
GGAGGAACCTCTGGCCGAGGATGAGGGTCCTTTGTGGGCAGCTGTTCCCGTACAGACAGGGCCC
CAGTATGCAGACTGTGCTGTTCTCCCAATGGGTGCAATGGCTGCAGAACAATGGGAAGAGGACC
CTGCAATGGTGGCCTGGAGCATAGCACCGGAGCCTATGCCCCAGGAAGAGACTTCCATGTGGCC
CTTTGAAGGCCTGGAACAGCTGCAGCCTCCCCCAATGGAAATACCTTATCATGAAATCCTGTGG
CGAGAATGGGAGGATTTCTCCACGCAGCCAGATGCTCAGGGTCTGGAGGCAGGAGATGGCCCTC
AGTTCCAGTTCACTCTGATGTCGTATAATATCCTGGCCCAGGATCTGATGCAGCAGAGCTCAGA
GCTCTATCTGCATTGCCATCCAGACATCCTCAACTGGAATTACCGCTTTGCCAACCTCATGCAG
GAATTCCAGCACTGGGACCCGGATATCCTGTGCCTTCAGGAAGTCCAGGAAGACCATTACTGGG
AGCAGCTGGAGCCCTCTCTGCGGATGATGGGCTTCACCTGTTTTTACAAGAGGAGGACTGGGTG
TAAAACGGATGGCTGCGCTGTGTGCTACAAGCCCACCAGGTTCCGTCTGCTGTGTGCCAGCCCT
GTGGAGTACTTCCGGCCTGGGTTGGAGCTCCTCAATCGGGACAATGTGGGCTTAGTGTTGCTGC
TGCAGCCGCTGGTGCCAGAAGGTCTGGGGCAAGTCTCAGTGGCTCCCCTGTGTGTGGCAAATAC
CCATGTCCTGTACAACCCACGTCGGGGTGATGTCAAGCTGGCCCAGATGGCCATTCTTCTGGCC
GAGGTGGACAAGGTGGCCAGGTTGTCAGATGGCAGCCACTGCCCTATCATCTTGTGTGGGGACC
TGAATTCTGTCCCTGATTCACCTCTCTACAACTTCATCAGGGATGGAGAGCTCCAGTACAATGG
GATGCCAGCCTGGAAGGTTTCTGGACAGGAAGACTTCTCTCATCAGCTTTACCAGAGGAAGCTG
CAGGCCCCATTGTGGCCCAGCTCCCTGGGCATCACTGATTGCTGTCAATATGTCACCTCCTGTC
ATCCCAAGAGATCAGAGAGACTAAAATATGGCCGAGACTTCCTACTACGATTCCGCTTCTGCGA
CCTCGCTTGTCAGCGACCAGTAGGACTGGTTCTCATGGAAGGAGTGACAGACACTAAGCCAGAT
CGACCTGCTGGTTGGGCCGAGTGTATCTTTGAGGAAGAGATATCTGAACTTGAGCCTGTCTTCC
CCAGGACTATAGGCACCATCCAGCACTGCCTCCACCTGACCTCAGTATATACCCATTTCCTGCC
CCAGCACGGCCGCCCGGAGGTCACGACGATGCCCTTAGGTCTTGGGATGACAGTGGATTACATT
TTTTTCTCAGCTGAGTCCTGTGAGAATGAGAACAGAAGTGATCACAGGTTGGATCGAGATGGAA
CCCTCAAGCTCCTGGGCCGCCTCTCCCTCCTCTCTGAAGAGATTCTCTGGGCGGCCAATGGCTT
GCCCAACCCGTTCTACTCTTCAGACCATCTCTGCTTGCTTGCCAGCTTCGGCATGGAAGTCACT
GCCCCATGAGGGCCCCCAGGGAAAGAGCTCACTGGACCGACGACTGCAAATGCCCCGTGCTGTG
GAAACTTATGCCCCTTCCCTTGTTCCCTCCTGCCCGTGGTTAGACTTTCTCCAGGCCTGTCCAC
GTTCTCGGCCTGTGGTCCCTGCCCTGCCCCAACCTCTTCCTAATCCTGTGCCACATGCTAGGTG
GCCCCGGGAGAGGTAGAGAGCATCCCCTTTCTTCTGTGTACCCAGCGCCCCCTTCCCCCCCATT
GATTTTTAATGACCAGGGTTGCGGGAGTTATTGATCTCATTGGTTATTCGCTTTAGGCCATTTC
TTGGTGGCACCCTCTGACCCAACCTTCCCCTTCCTTTCATGACCTCTGGGCTCTGGCATGCACA
TGCAAGGTGTGTGTAAAGCATGAGTTCTCTTGGGGTGGGACTGCCCAGCACAGCCAAGCCTGCT
TCTGCCTAGTCCATGTGCCACCATGAGGTACTGGACTAGGGGCAGGTGGAGAGCATGATGTAGT
AGCTGTGTGCTGCCAGGAGGCAGCAAGCAGGGGCCCTTTTCTCCCAGTCAGTCATCTAGGCATC
CTGGGCACACTTGTTATTTCTGGAGACAAACTGGCCCACAGCCTGGAGCGGTAGCCCAGGGATA
CCCCACACCTCTGATCTCCTCACTGACTTCCTTGAGGAAGGCGGTTGATGCCTTGTGCTGGGGC
TCGCTGGGCTGGCACAGTGCTGGGAGGCTTTAAGGATGAGGAGACTCCACCTTCAGGGAACTGT
TGTCTCACCAGACTGAGGAACTGGGTAAGAGGCGGAGCCCGGTAGAAAGAGCAGGAGGCTCTAC
AGCCTTAGCCAGCACTGGAGCCCCAGAGGGCTTGACCTCTGACCTCTGTGCACCTAAGAAAGTT
TCTTTGCTTCTTCTCCCCACCCACCCCCACCCCCTCTTGTTCCCTTCCATTTTCTCTCCGGAGA
AGCGTGCTGTTTAGCTCAGGCCAAAACATCTCAACAGAAGCCTGGCTTTGGGCACACTAGGTCT
AAGAACTCAGGGTGGCAGTGCTTACTCATTTGCTCTGCCTTTCCTCCCCAAAAGTGGGCTCCCT
AACCTACAGAAAACCCCTGTAGCCCAAACCATGTCACCTGCATGCCTTATTCAGTGCTGGGGTA
CAGCCTAGGGTGTCCTTGGGCCAGATCCTCCACACAGCTTTAACTCAAAATATCTGCTGGCCCT
AGTTGGGAGGGAATTGACTGAGGCTGGAGTTAGGCTTGGTGGACCAGGAGCCCCATTCTTCCCT
TGATTTGGAAGCCAAAAACCCAGCTGGAACGCTGCTGCTGCACTGCTGACTCTCAGCTTCCCAT
GCTCAGGTCTGGGGACTTCTTGTCCTGTGTGTGTCTATTTTAAGTTTTGTTCTCTGGGTACTGG
GCATCTGCCTGTCTGAGCCCCAGGCCCATCTGCCCACAACCCACTTTTCTCTGTCACTCTCTGG
GCACCTCCTGAGATGGCCCCACAGCTGAGCCCTGCTGGTTCTCAGAACAGGGCCAATGATTGTT
CCCTCTGCCAGGAAATGCAGGGTCAACTGCTAAAGAAGGTGGAGGCCCAGAGCTTGATGGTTTA
TCTTTTCCTTGTTTCTCCTTTGTTTCTGTTTTAGAAATGAAGTGTGGGGGTTTAAATGGCATTT
AAGCTGTACCCTGGAGCCGGCAGAACCAGGCAACGTTTTTTTCAAATAAAGGCTTATCATGCCC
CCTA

hide sequence

RefSeq Acc Id:

XM_017594229 ⟹ XP_017449718

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	106,349,125 - 106,386,202 (-)	NCBI
Rnor_6.0	6	110,644,327 - 110,681,397 (-)	NCBI

Sequence:

show sequence

GGCCTCCCACCCTTTTGGTGGCTCTGGTGGTCATCTTTTCTCATATGTTTGCTGGGTCTAAGCC
CAGACTTGGCTGTGAGTGCTCGGGTGCTGTAGGAGGGCCTCTTAGTGACAGCCTAATTCCTTCT
GAGTTAGCACCAACCCCAAGGCTCCTAGTCAGGTGACTGTGAAGCGCCGCCACCATGTTTTTTT
CTCAAGGTGGCTGCGCTTCAGGTACGAAGTATTTCAGTGATGGGTGAAGTCAGGTTTCTTCTAC
CCAGTTCGTCCTTTTTGCTCGCACCCGTGGGAGAGCATCCTCGACCTTGGCACAGAAGAACAAA
AATCAAAGCACCACAAGCATATGTCCTATCAGCACGGTTCGTTGCTACCCCAGCATTGCTCACG
CCAGACTCCTAAGCTGTTTAACTTGAGGCCAGCATTCCCCACTCAGCTGTGCTCGCATGTGGAG
TTGAAGTTCACTCGAGGTGCAGTGTCGAGAGATCCCAAGGGCTTGTCCATTGTTCCTTGATTAA
GGCTTCAGGGCGTCAACAGTCAGGGTCTCTTGCTGAACTCGGAACTCATTGATTGGCTAGAGTG
GCTGACTAGTGAACCCCAAGATCCTCCTGTCTTCACCAAACACTGTTGGGATTACAGGGGTACA
TTGCTTTTTATGTGGATGCTGGGGATTCGAATTCAAGCCATCACGCTTGCCAGCTAAGCCATCT
TCCTAGCGCTAGATGCCTTGGCTGAATCTATGTCTGTGTGCCACTTATATGCCTGGTGCCTGCA
GAGCCTAGAAGAGGGGAGTTACAGATGACTGTGAGCCACCATTTCGTCAGTATTATGATGTATC
CAGCTGGTCCAGGATCTGGTGACTCCCCAGAGGGCTTCCCTGAACAGCCAAGGCTCCAGTCACA
AATTGGAAACGGCGCAGCTCAGACACTGGATGCTTTCTTTACATGTCGAAAAAATGCCCTTCTG
GCGAAGAGCTCGTCCCCCCAGGTAGAGGGTAACTTTGCCATGGCCCCTCGGGGGCCTGACCAAG
AGGAGTGTGAGGGCCTGCTTCAGCAGTGGCGAGAAGAAGGGTGGAACCAGACACTCTCAACTGC
AAGTGAGGGTCCTCTTGCAGATAAGGGACTGGCTGAGAGCAGCCTGGCCCTCCTGATGGATAAC
TCTGGAGAACAGGACACTGCCTCGGAGGACAAGTGGTCCAGCAGGCAGCTGAGTGACCTTCGGG
CAGCGGACAACCTGGACCAGCCTTTCCCTGAGGTGCTAGGGGAGGAACCTCTGGCCGAGGATGA
GGGTCCTTTGTGGGCAGCTGTTCCCGTACAGACAGGGCCCCAGTATGCAGACTGTGCTGTTCTC
CCAATGGGTGCAATGGCTGCAGAACAATGGGAAGAGGACCCTGCAATGGTGGCCTGGAGCATAG
CACCGGAGCCTATGCCCCAGGAAGAGACTTCCATGTGGCCCTTTGAAGGCCTGGAACAGCTGCA
GCCTCCCCCAATGGAAATACCTTATCATGAAATCCTGTGGCGAGAATGGGAGGATTTCTCCACG
CAGCCAGATGCTCAGGGTCTGGAGGCAGGAGATGGCCCTCAGTTCCAGTTCACTCTGATGTCGT
ATAATATCCTGGCCCAGGATCTGATGCAGCAGAGCTCAGAGCTCTATCTGCATTGCCATCCAGA
CATCCTCAACTGGAATTACCGCTTTGCCAACCTCATGCAGGAATTCCAGCACTGGGACCCGGAT
ATCCTGTGCCTTCAGGAAGTCCAGGAAGACCATTACTGGGAGCAGCTGGAGCCCTCTCTGCGGA
TGATGGGCTTCACCTGTTTTTACAAGAGGAGGACTGGGTGTAAAACGGATGGCTGCGCTGTGTG
CTACAAGCCCACCAGGTTCCGTCTGCTGTGTGCCAGCCCTGTGGAGTACTTCCGGCCTGGGTTG
GAGCTCCTCAATCGGGACAATGTGGGCTTAGTGTTGCTGCTGCAGCCGCTGGTGCCAGAAGGTC
TGGGGCAAGTCTCAGTGGCTCCCCTGTGTGTGGCAAATACCCATGTCCTGTACAACCCACGTCG
GGGTGATGTCAAGCTGGCCCAGATGGCCATTCTTCTGGCCGAGGTGGACAAGGTGGCCAGGTTG
TCAGATGGCAGCCACTGCCCTATCATCTTGTGTGGGGACCTGAATTCTGTCCCTGATTCACCTC
TCTACAACTTCATCAGGGATGGAGAGCTCCAGTACAATGGGATGCCAGCCTGGAAGGTTTCTGG
ACAGGAAGACTTCTCTCATCAGCTTTACCAGAGGAAGCTGCAGGCCCCATTGTGGCCCAGCTCC
CTGGGCATCACTGATTGCTGTCAATATGTCACCTCCTGTCATCCCAAGAGATCAGAGAGACTAA
AATATGGCCGAGACTTCCTACTACGATTCCGCTTCTGCGACCTCGCTTGTCAGCGACCAGTAGG
ACTGGTTCTCATGGAAGGAGTGACAGACACTAAGCCAGATCGACCTGCTGGTTGGGCCGAGTGT
ATCTTTGAGGAAGAGATATCTGAACTTGAGCCTGTCTTCCCCAGGACTATAGGCACCATCCAGC
ACTGCCTCCACCTGACCTCAGTATATACCCATTTCCTGCCCCAGCACGGCCGCCCGGAGGTCAC
GACGATGCCCTTAGGTCTTGGGATGACAGTGGATTACATTTTTTTCTCAGCTGAGTCCTGTGAG
AATGAGAACAGAAGTGATCACAGGTTGGATCGAGATGGAACCCTCAAGCTCCTGGGCCGCCTCT
CCCTCCTCTCTGAAGAGATTCTCTGGGCGGCCAATGGCTTGCCCAACCCGTTCTACTCTTCAGA
CCATCTCTGCTTGCTTGCCAGCTTCGGCATGGAAGTCACTGCCCCATGAGGGCCCCCAGGGAAA
GAGCTCACTGGACCGACGACTGCAAATGCCCCGTGCTGTGGAAACTTATGCCCCTTCCCTTGTT
CCCTCCTGCCCGTGGTTAGACTTTCTCCAGGCCTGTCCACGTTCTCGGCCTGTGGTCCCTGCCC
TGCCCCAACCTCTTCCTAATCCTGTGCCACATGCTAGGTGGCCCCGGGAGAGGTAGAGAGCATC
CCCTTTCTTCTGTGTACCCAGCGCCCCCTTCCCCCCCATTGATTTTTAATGACCAGGGTTGCGG
GAGTTATTGATCTCATTGGTTATTCGCTTTAGGCCATTTCTTGGTGGCACCCTCTGACCCAACC
TTCCCCTTCCTTTCATGACCTCTGGGCTCTGGCATGCACATGCAAGGTGTGTGTAAAGCATGAG
TTCTCTTGGGGTGGGACTGCCCAGCACAGCCAAGCCTGCTTCTGCCTAGTCCATGTGCCACCAT
GAGGTACTGGACTAGGGGCAGGTGGAGAGCATGATGTAGTAGCTGTGTGCTGCCAGGAGGCAGC
AAGCAGGGGCCCTTTTCTCCCAGTCAGTCATCTAGGCATCCTGGGCACACTTGTTATTTCTGGA
GACAAACTGGCCCACAGCCTGGAGCGGTAGCCCAGGGATACCCCACACCTCTGATCTCCTCACT
GACTTCCTTGAGGAAGGCGGTTGATGCCTTGTGCTGGGGCTCGCTGGGCTGGCACAGTGCTGGG
AGGCTTTAAGGATGAGGAGACTCCACCTTCAGGGAACTGTTGTCTCACCAGACTGAGGAACTGG
GTAAGAGGCGGAGCCCGGTAGAAAGAGCAGGAGGCTCTACAGCCTTAGCCAGCACTGGAGCCCC
AGAGGGCTTGACCTCTGACCTCTGTGCACCTAAGAAAGTTTCTTTGCTTCTTCTCCCCACCCAC
CCCCACCCCCTCTTGTTCCCTTCCATTTTCTCTCCGGAGAAGCGTGCTGTTTAGCTCAGGCCAA
AACATCTCAACAGAAGCCTGGCTTTGGGCACACTAGGTCTAAGAACTCAGGGTGGCAGTGCTTA
CTCATTTGCTCTGCCTTTCCTCCCCAAAAGTGGGCTCCCTAACCTACAGAAAACCCCTGTAGCC
CAAACCATGTCACCTGCATGCCTTATTCAGTGCTGGGGTACAGCCTAGGGTGTCCTTGGGCCAG
ATCCTCCACACAGCTTTAACTCAAAATATCTGCTGGCCCTAGTTGGGAGGGAATTGACTGAGGC
TGGAGTTAGGCTTGGTGGACCAGGAGCCCCATTCTTCCCTTGATTTGGAAGCCAAAAACCCAGC
TGGAACGCTGCTGCTGCACTGCTGACTCTCAGCTTCCCATGCTCAGGTCTGGGGACTTCTTGTC
CTGTGTGTGTCTATTTTAAGTTTTGTTCTCTGGGTACTGGGCATCTGCCTGTCTGAGCCCCAGG
CCCATCTGCCCACAACCCACTTTTCTCTGTCACTCTCTGGGCACCTCCTGAGATGGCCCCACAG
CTGAGCCCTGCTGGTTCTCAGAACAGGGCCAATGATTGTTCCCTCTGCCAGGAAATGCAGGGTC
AACTGCTAAAGAAGGTGGAGGCCCAGAGCTTGATGGTTTATCTTTTCCTTGTTTCTCCTTTGTT
TCTGTTTTAGAAATGAAGTGTGGGGGTTTAAATGGCATTTAAGCTGTACCCTGGAGCCGGCAGA
ACCAGGCAACGTTTTTTTCAAATAAAGGCTTATCATGCCCCCTA

hide sequence

RefSeq Acc Id:

XM_039112514 ⟹ XP_038968442

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	106,349,125 - 106,386,202 (-)	NCBI

RefSeq Acc Id:

XM_039112516 ⟹ XP_038968444

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	106,349,125 - 106,386,202 (-)	NCBI

RefSeq Acc Id:

XM_039112517 ⟹ XP_038968445

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	106,349,125 - 106,374,516 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102187	(Get FASTA)	NCBI Sequence Viewer
	XP_006240454	(Get FASTA)	NCBI Sequence Viewer
	XP_008763037	(Get FASTA)	NCBI Sequence Viewer
	XP_017449718	(Get FASTA)	NCBI Sequence Viewer
	XP_038968442	(Get FASTA)	NCBI Sequence Viewer
	XP_038968444	(Get FASTA)	NCBI Sequence Viewer
	XP_038968445	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI66827	(Get FASTA)	NCBI Sequence Viewer
	B2RYM0	(Get FASTA)	NCBI Sequence Viewer
	EDL81607	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001102187 ⟸ NM_001108717

- UniProtKB:

B2RYM0 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MIASCLYYLLLPAARLFRFLSDAFFTCRKNALLAKSSSPQVEGNFAMAPRGPDQEECEGLLQQW
REEGWNQTLSTASEGPLADKGLAESSLALLMDNSGEQDTASEDKWSSRQLSDLRAADNLDQPFP
EVLGEEPLAEDEGPLWAAVPVQTGPQYADCAVLPMGAMAAEQWEEDPAMVAWSIAPEPMPQEET
SMWPFEGLEQLQPPPMEIPYHEILWREWEDFSTQPDAQGLEAGDGPQFQFTLMSYNILAQDLMQ
QSSELYLHCHPDILNWNYRFANLMQEFQHWDPDILCLQEVQEDHYWEQLEPSLRMMGFTCFYKR
RTGCKTDGCAVCYKPTRFRLLCASPVEYFRPGLELLNRDNVGLVLLLQPLVPEGLGQVSVAPLC
VANTHVLYNPRRGDVKLAQMAILLAEVDKVARLSDGSHCPIILCGDLNSVPDSPLYNFIRDGEL
QYNGMPAWKVSGQEDFSHQLYQRKLQAPLWPSSLGITDCCQYVTSCHPKRSERLKYGRDFLLRF
RFCDLACQRPVGLVLMEGVTDTKPDRPAGWAECIFEEEISELEPVFPRTIGTIQHCLHLTSVYT
HFLPQHGRPEVTTMPLGLGMTVDYIFFSAESCENENRSDHRLDRDGTLKLLGRLSLLSEEILWA
ANGLPNPFYSSDHLCLLASFGMEVTAP

hide sequence

RefSeq Acc Id:	XP_006240454 ⟸ XM_006240392
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2K3W9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMYPAGPGSGDSPEGFPEQPRLQSQIGNGAAQTLDAFFTCRKNALLAKSSSPQVEGNFAMAPRG PDQEECEGLLQQWREEGWNQTLSTASEGPLADKGLAESSLALLMDNSGEQDTASEDKWSSRQLS DLRAADNLDQPFPEVLGEEPLAEDEGPLWAAVPVQTGPQYADCAVLPMGAMAAEQWEEDPAMVA WSIAPEPMPQEETSMWPFEGLEQLQPPPMEIPYHEILWREWEDFSTQPDAQGLEAGDGPQFQFT LMSYNILAQDLMQQSSELYLHCHPDILNWNYRFANLMQEFQHWDPDILCLQEVQEDHYWEQLEP SLRMMGFTCFYKRRTGCKTDGCAVCYKPTRFRLLCASPVEYFRPGLELLNRDNVGLVLLLQPLV PEGLGQVSVAPLCVANTHVLYNPRRGDVKLAQMAILLAEVDKVARLSDGSHCPIILCGDLNSVP DSPLYNFIRDGELQYNGMPAWKVSGQEDFSHQLYQRKLQAPLWPSSLGITDCCQYVTSCHPKRS ERLKYGRDFLLRFRFCDLACQRPVGLVLMEGVTDTKPDRPAGWAECIFEEEISELEPVFPRTIG TIQHCLHLTSVYTHFLPQHGRPEVTTMPLGLGMTVDYIFFSAESCENENRSDHRLDRDGTLKLL GRLSLLSEEILWAANGLPNPFYSSDHLCLLASFGMEVTAP hide sequence

RefSeq Acc Id:

XP_008763037 ⟸ XM_008764815

- Peptide Label:

isoform X3

- Sequence:

show sequence

MAPRGPDQEECEGLLQQWREEGWNQTLSTASEGPLADKGLAESSLALLMDNSGEQDTASEDKWS
SRQLSDLRAADNLDQPFPEVLGEEPLAEDEGPLWAAVPVQTGPQYADCAVLPMGAMAAEQWEED
PAMVAWSIAPEPMPQEETSMWPFEGLEQLQPPPMEIPYHEILWREWEDFSTQPDAQGLEAGDGP
QFQFTLMSYNILAQDLMQQSSELYLHCHPDILNWNYRFANLMQEFQHWDPDILCLQEVQEDHYW
EQLEPSLRMMGFTCFYKRRTGCKTDGCAVCYKPTRFRLLCASPVEYFRPGLELLNRDNVGLVLL
LQPLVPEGLGQVSVAPLCVANTHVLYNPRRGDVKLAQMAILLAEVDKVARLSDGSHCPIILCGD
LNSVPDSPLYNFIRDGELQYNGMPAWKVSGQEDFSHQLYQRKLQAPLWPSSLGITDCCQYVTSC
HPKRSERLKYGRDFLLRFRFCDLACQRPVGLVLMEGVTDTKPDRPAGWAECIFEEEISELEPVF
PRTIGTIQHCLHLTSVYTHFLPQHGRPEVTTMPLGLGMTVDYIFFSAESCENENRSDHRLDRDG
TLKLLGRLSLLSEEILWAANGLPNPFYSSDHLCLLASFGMEVTAP

hide sequence

RefSeq Acc Id:

XP_017449718 ⟸ XM_017594229

- Peptide Label:

isoform X1

- Sequence:

show sequence

MTVSHHFVSIMMYPAGPGSGDSPEGFPEQPRLQSQIGNGAAQTLDAFFTCRKNALLAKSSSPQV
EGNFAMAPRGPDQEECEGLLQQWREEGWNQTLSTASEGPLADKGLAESSLALLMDNSGEQDTAS
EDKWSSRQLSDLRAADNLDQPFPEVLGEEPLAEDEGPLWAAVPVQTGPQYADCAVLPMGAMAAE
QWEEDPAMVAWSIAPEPMPQEETSMWPFEGLEQLQPPPMEIPYHEILWREWEDFSTQPDAQGLE
AGDGPQFQFTLMSYNILAQDLMQQSSELYLHCHPDILNWNYRFANLMQEFQHWDPDILCLQEVQ
EDHYWEQLEPSLRMMGFTCFYKRRTGCKTDGCAVCYKPTRFRLLCASPVEYFRPGLELLNRDNV
GLVLLLQPLVPEGLGQVSVAPLCVANTHVLYNPRRGDVKLAQMAILLAEVDKVARLSDGSHCPI
ILCGDLNSVPDSPLYNFIRDGELQYNGMPAWKVSGQEDFSHQLYQRKLQAPLWPSSLGITDCCQ
YVTSCHPKRSERLKYGRDFLLRFRFCDLACQRPVGLVLMEGVTDTKPDRPAGWAECIFEEEISE
LEPVFPRTIGTIQHCLHLTSVYTHFLPQHGRPEVTTMPLGLGMTVDYIFFSAESCENENRSDHR
LDRDGTLKLLGRLSLLSEEILWAANGLPNPFYSSDHLCLLASFGMEVTAP

hide sequence

RefSeq Acc Id:

ENSRNOP00000014635 ⟸ ENSRNOT00000014635

RefSeq Acc Id:

ENSRNOP00000072809 ⟸ ENSRNOT00000078265

RefSeq Acc Id:	XP_038968442 ⟸ XM_039112514
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038968444 ⟸ XM_039112516
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038968445 ⟸ XM_039112517
- Peptide Label:	isoform X3

Protein Domains

Endo/exonuclease/phosphatase

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694748

Promoter ID:

EPDNEW_R5272

Type:

single initiation site

Name:

Angel1_2

Description:

angel homolog 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R5273

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	110,669,913 - 110,669,973	EPDNEW

RGD ID:

13694755

Promoter ID:

EPDNEW_R5273

Type:

multiple initiation site

Name:

Angel1_1

Description:

angel homolog 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R5272

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	110,681,355 - 110,681,415	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306238	AgrOrtholog
Ensembl Genes	ENSRNOG00000010567	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000014635	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOP00000072809	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000014635	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOT00000078265	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:8372804	IMAGE-MGC_LOAD
InterPro	Endo/exonu/phosph_ase_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Endo/exonuclease/phosphatase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:362765	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:188710	IMAGE-MGC_LOAD
NCBI Gene	362765	ENTREZGENE
Pfam	Exo_endo_phos	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Angel1	PhenoGen
Superfamily-SCOP	SSF56219	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2K3W9	ENTREZGENE, UniProtKB/TrEMBL
	ANGE1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-07-06	Angel1	angel homolog 1	Angel1	angel homolog 1 (Drosophila)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Angel1	angel homolog 1 (Drosophila)	Angel1_predicted	angel homolog 1 (Drosophila) (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Angel1_predicted	angel homolog 1 (Drosophila) (predicted)	RGD1306238_predicted	similar to RIKEN cDNA 1110030H02 (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-20	RGD1306238_predicted	similar to RIKEN cDNA 1110030H02 (predicted)	LOC362765_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC362765_predicted	similar to RIKEN cDNA 1110030H02 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar