LOC103246456 (40S ribosomal protein S9-like) - Rat Genome Database

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Gene: LOC103246456 (40S ribosomal protein S9-like) Chlorocebus sabaeus
Analyze
Symbol: LOC103246456
Name: 40S ribosomal protein S9-like
RGD ID: 18666533
Description: ENCODES a protein that exhibits rRNA binding (inferred); structural constituent of ribosome (inferred); INVOLVED IN ribosomal small subunit biogenesis (inferred); translation (inferred); FOUND IN cytosolic small ribosomal subunit (inferred); ribonucleoprotein complex (inferred); ribosome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 40S ribosomal protein S9 pseudogene
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1226,620,558 - 26,621,336 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607117,977,252 - 17,977,993 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High 1 1
Medium 35 20 59
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: XM_037990712   ⟹   XP_037846640
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607117,977,252 - 17,977,993 (+)NCBI
Protein Sequences
Protein RefSeqs XP_037846640 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000018277.1
Reference Protein Sequences
RefSeq Acc Id: XP_037846640   ⟸   XM_037990712
- UniProtKB: A0A0D9SBN8 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000018755 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000018845.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.290.10 UniProtKB/TrEMBL
InterPro Ribosomal_S4/S9 UniProtKB/TrEMBL
  Ribosomal_S4/S9_euk/arc UniProtKB/TrEMBL
  Ribosomal_S4/S9_N UniProtKB/TrEMBL
  Ribosomal_S4_CS UniProtKB/TrEMBL
  S4_RNA-bd UniProtKB/TrEMBL
  S4_RNA-bd_sf UniProtKB/TrEMBL
NCBI Gene LOC103246456 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S9 UniProtKB/TrEMBL
  PTHR11831 UniProtKB/TrEMBL
Pfam PF01479 UniProtKB/TrEMBL
  Ribosomal_S4 UniProtKB/TrEMBL
PROSITE PS50889 UniProtKB/TrEMBL
  RIBOSOMAL_S4 UniProtKB/TrEMBL
SMART Ribosomal_S4 UniProtKB/TrEMBL
  SM00363 UniProtKB/TrEMBL
Superfamily-SCOP Alpha-L RNA-binding motif UniProtKB/TrEMBL
UniProt A0A0D9SBN8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-08 LOC103246456  40S ribosomal protein S9-like  LOC103246456  40S ribosomal protein S9 pseudogene  Symbol and/or name change 5135510 APPROVED