PATL1 (PAT1 homolog 1, processing body mRNA decay factor) - Rat Genome Database

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Gene: PATL1 (PAT1 homolog 1, processing body mRNA decay factor) Chlorocebus sabaeus
Analyze
Symbol: PATL1
Name: PAT1 homolog 1, processing body mRNA decay factor
RGD ID: 18663453
Description: ENCODES a protein that exhibits poly(G) binding (inferred); poly(U) RNA binding (inferred); RNA binding (inferred); INVOLVED IN deadenylation-dependent decapping of nuclear-transcribed mRNA (inferred); P-body assembly (inferred); PARTICIPATES IN microRNA pathway; ASSOCIATED WITH intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog); FOUND IN CCR4-NOT complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein PAT1 homolog 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1113,955,730 - 13,989,364 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl113,957,050 - 13,988,488 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038111,284,744 - 111,318,143 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
PATL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1113,955,730 - 13,989,364 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl113,957,050 - 13,988,488 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038111,284,744 - 111,318,143 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
PATL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381159,636,716 - 59,669,037 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1159,636,716 - 59,669,037 (-)EnsemblGRCh38hg38GRCh38
GRCh371159,404,189 - 59,436,510 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361159,160,770 - 59,182,994 (-)NCBINCBI36Build 36hg18NCBI36
Celera1156,766,936 - 56,799,259 (-)NCBICelera
Cytogenetic Map11q12.1NCBI
HuRef1155,751,480 - 55,783,808 (-)NCBIHuRef
CHM1_11159,270,207 - 59,302,529 (-)NCBICHM1_1
T2T-CHM13v2.01159,587,649 - 59,620,355 (-)NCBIT2T-CHM13v2.0
Patl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391911,889,728 - 11,922,462 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1911,889,763 - 11,922,455 (+)EnsemblGRCm39 Ensembl
GRCm381911,912,399 - 11,945,096 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1911,912,399 - 11,945,091 (+)EnsemblGRCm38mm10GRCm38
MGSCv371911,986,889 - 12,019,586 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361911,979,481 - 12,012,011 (+)NCBIMGSCv36mm8
Celera1912,605,678 - 12,638,262 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map198.57NCBI
Patl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81218,255,801 - 218,287,662 (+)NCBIGRCr8
mRatBN7.21208,831,115 - 208,862,904 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1208,831,115 - 208,862,857 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1217,205,779 - 217,237,531 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01224,181,679 - 224,213,441 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01216,960,225 - 216,991,968 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01228,337,756 - 228,369,719 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1228,337,767 - 228,369,761 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01235,401,989 - 235,433,952 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41214,755,170 - 214,787,272 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11214,912,909 - 214,945,743 (+)NCBI
Celera1206,298,832 - 206,330,574 (+)NCBICelera
Cytogenetic Map1q43NCBI
Patl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555114,092,257 - 4,119,077 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555114,090,841 - 4,119,077 (-)NCBIChiLan1.0ChiLan1.0
PATL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2960,767,146 - 60,801,732 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11161,811,229 - 61,843,150 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01154,861,349 - 54,893,279 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11158,311,230 - 58,342,561 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1158,311,235 - 58,342,561 (-)Ensemblpanpan1.1panPan2
PATL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11837,109,288 - 37,138,756 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1837,109,410 - 37,137,156 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1836,757,509 - 36,785,988 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01837,748,206 - 37,776,677 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1837,748,124 - 37,777,413 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11837,338,132 - 37,366,569 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01836,913,966 - 36,942,673 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01837,543,665 - 37,572,397 (+)NCBIUU_Cfam_GSD_1.0
Patl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494712,959,952 - 12,986,765 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365813,074,572 - 3,098,932 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365813,075,371 - 3,100,584 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PATL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl211,827,773 - 11,857,691 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1211,826,816 - 11,857,699 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2211,288,232 - 11,330,834 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Patl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248641,136,999 - 1,161,320 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248641,136,868 - 1,162,720 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000004133   ⟹   ENSCSAP00000002394
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl113,957,050 - 13,988,488 (+)Ensembl
RefSeq Acc Id: XM_037999270   ⟹   XP_037855198
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666038111,284,744 - 111,318,143 (+)NCBI
RefSeq Acc Id: XM_037999271   ⟹   XP_037855199
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666038111,284,744 - 111,318,143 (+)NCBI
Protein Sequences
Protein RefSeqs XP_037855198 (Get FASTA)   NCBI Sequence Viewer  
  XP_037855199 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000002394.1
Ensembl Acc Id: ENSCSAP00000002394   ⟸   ENSCSAT00000004133
RefSeq Acc Id: XP_037855198   ⟸   XM_037999270
- Peptide Label: isoform X1
- UniProtKB: A0A0D9R1A5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037855199   ⟸   XM_037999271
- Peptide Label: isoform X2
- UniProtKB: A0A0D9R1A5 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000006095 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000004133.1 UniProtKB/TrEMBL
InterPro Pat1-like UniProtKB/TrEMBL
  PAT1_dom UniProtKB/TrEMBL
NCBI Gene PATL1 ENTREZGENE
PANTHER PROTEIN PAT1 HOMOLOG 1 UniProtKB/TrEMBL
  PTHR21551 UniProtKB/TrEMBL
Pfam PAT1 UniProtKB/TrEMBL
UniProt A0A0D9R1A5 ENTREZGENE, UniProtKB/TrEMBL