SARS1 (seryl-tRNA synthetase 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: SARS1 (seryl-tRNA synthetase 1) Chlorocebus sabaeus
Analyze
Symbol: SARS1
Name: seryl-tRNA synthetase 1
RGD ID: 18659332
Description: ENCODES a protein that exhibits enzyme binding (ortholog); molecular adaptor activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN cytoplasmic translation (ortholog); negative regulation of angiogenesis (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN dihydropyrimidine dehydrogenase deficiency pathway; dimethylglycine dehydrogenase deficiency pathway; nonketotic hyperglycinemia pathway; ASSOCIATED WITH arteriovenous malformations of the brain (ortholog); autistic disorder (ortholog); coronary artery disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC103247264; serine--tRNA ligase, cytoplasmic; serine--tRNA ligase, cytoplasmic-like
RGD Orthologs
Human
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366603833,905,383 - 33,964,126 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
cytosol  (ISO)
nucleus  (ISO)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SARS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366603833,905,383 - 33,964,126 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SARS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381109,213,893 - 109,238,182 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1109,213,918 - 109,238,182 (+)EnsemblGRCh38hg38GRCh38
GRCh371109,756,515 - 109,780,804 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361109,558,063 - 109,582,308 (+)NCBINCBI36Build 36hg18NCBI36
Build 341109,468,581 - 109,492,827NCBI
Celera1108,025,871 - 108,050,163 (+)NCBICelera
Cytogenetic Map1p13.3NCBI
HuRef1107,649,736 - 107,674,024 (+)NCBIHuRef
CHM1_11109,871,309 - 109,895,637 (+)NCBICHM1_1
T2T-CHM13v2.01109,246,703 - 109,270,991 (+)NCBIT2T-CHM13v2.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_037997315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_037997315   ⟹   XP_037853243
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603833,905,383 - 33,964,126 (-)NCBI
Protein Sequences
Protein RefSeqs XP_037853243 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_037853243   ⟸   XM_037997315


Additional Information

Database Acc Id Source(s)
NCBI Gene LOC103247264 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-08 SARS1  seryl-tRNA synthetase 1  LOC103247264  serine--tRNA ligase, cytoplasmic-like  Symbol and/or name change 5135510 APPROVED