DYM (dymeclin) - Rat Genome Database

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Gene: DYM (dymeclin) Chlorocebus sabaeus
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Symbol: DYM
Name: dymeclin
RGD ID: 18648712
Description: ENCODES a protein that exhibits enzyme binding (ortholog); INVOLVED IN bone development (ortholog); ASSOCIATED WITH connective tissue disease (ortholog); Dyggve-Melchior-Clausen disease (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11831,513,665 - 31,902,064 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1831,513,735 - 31,901,811 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660505,734,433 - 6,137,618 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
DYM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11831,513,665 - 31,902,064 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1831,513,735 - 31,901,811 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660505,734,433 - 6,137,618 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
DYM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381849,036,387 - 49,460,645 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1849,036,387 - 49,461,347 (-)EnsemblGRCh38hg38GRCh38
GRCh371846,562,757 - 46,987,015 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361844,824,170 - 45,241,077 (-)NCBINCBI36Build 36hg18NCBI36
Build 341844,824,169 - 45,241,077NCBI
Celera1843,423,709 - 43,842,456 (-)NCBICelera
Cytogenetic Map18q21.1NCBI
HuRef1843,422,918 - 43,840,755 (-)NCBIHuRef
CHM1_11846,565,142 - 46,982,392 (-)NCBICHM1_1
T2T-CHM13v2.01849,231,816 - 49,658,383 (-)NCBIT2T-CHM13v2.0
Dym
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391875,151,772 - 75,420,037 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1875,151,852 - 75,420,035 (+)EnsemblGRCm39 Ensembl
GRCm381875,018,699 - 75,286,966 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1875,018,781 - 75,286,964 (+)EnsemblGRCm38mm10GRCm38
MGSCv371875,178,426 - 75,446,620 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361875,144,137 - 75,412,331 (+)NCBIMGSCv36mm8
Celera1876,242,337 - 76,521,558 (+)NCBICelera
Cytogenetic Map18E3NCBI
cM Map1850.97NCBI
Dym
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81870,879,835 - 71,176,006 (+)NCBIGRCr8
mRatBN7.21868,605,131 - 68,900,905 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1868,605,185 - 68,900,903 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1870,718,041 - 71,013,638 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01871,386,410 - 71,683,811 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01869,244,060 - 69,539,675 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01870,996,074 - 71,313,033 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1870,996,044 - 71,313,084 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01870,178,416 - 70,449,688 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41871,889,053 - 72,188,251 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11871,962,174 - 72,261,226 (+)NCBI
Celera1866,780,263 - 67,073,707 (+)NCBICelera
Cytogenetic Map18q12.2NCBI
Dym
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540234,150,783 - 34,542,507 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540234,150,783 - 34,541,944 (-)NCBIChiLan1.0ChiLan1.0
DYM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21766,578,224 - 66,989,529 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11852,268,524 - 52,682,132 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01842,427,493 - 42,842,450 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11845,780,831 - 46,179,616 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1845,783,379 - 46,162,835 (-)Ensemblpanpan1.1panPan2
DYM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1779,286,558 - 79,629,451 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl779,286,614 - 79,629,043 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha778,691,499 - 79,034,045 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0779,353,467 - 79,696,604 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl779,353,400 - 79,697,033 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1779,068,269 - 79,410,974 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0779,098,408 - 79,441,226 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0779,383,285 - 79,726,463 (+)NCBIUU_Cfam_GSD_1.0
Dym
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494438,237,505 - 38,575,582 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649713,476,326 - 13,818,059 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649713,476,376 - 13,816,515 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DYM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl198,638,339 - 99,024,642 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1198,642,506 - 99,024,664 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21108,216,906 - 108,352,210 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Dym
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477812,541,566 - 12,977,314 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477812,541,566 - 12,977,319 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 8 57
Low 12 3
Below cutoff

Sequence


RefSeq Acc Id: ENSCSAT00000016123   ⟹   ENSCSAP00000014044
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1831,513,735 - 31,901,811 (+)Ensembl
RefSeq Acc Id: XM_007974061   ⟹   XP_007972252
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11831,513,671 - 31,902,064 (+)NCBI
Vero_WHO_p1.0NW_0236660505,734,433 - 6,137,618 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007974062   ⟹   XP_007972253
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11831,539,741 - 31,902,064 (+)NCBI
Vero_WHO_p1.0NW_0236660505,760,722 - 6,136,775 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007974063   ⟹   XP_007972254
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11831,517,414 - 31,902,064 (+)NCBI
Vero_WHO_p1.0NW_0236660505,738,365 - 6,136,775 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007974064   ⟹   XP_007972255
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11831,513,671 - 31,902,064 (+)NCBI
Vero_WHO_p1.0NW_0236660505,734,433 - 6,136,775 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007974065   ⟹   XP_007972256
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11831,513,670 - 31,902,064 (+)NCBI
Vero_WHO_p1.0NW_0236660505,734,433 - 6,136,775 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007974066   ⟹   XP_007972257
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11831,513,668 - 31,902,064 (+)NCBI
Vero_WHO_p1.0NW_0236660505,734,433 - 6,137,618 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037982333   ⟹   XP_037838261
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660505,734,433 - 6,137,618 (+)NCBI
RefSeq Acc Id: XM_037982334   ⟹   XP_037838262
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660505,734,433 - 6,137,618 (+)NCBI
RefSeq Acc Id: XP_007972257   ⟸   XM_007974066
- Peptide Label: isoform X3
RefSeq Acc Id: XP_007972256   ⟸   XM_007974065
- Peptide Label: isoform X2
RefSeq Acc Id: XP_007972252   ⟸   XM_007974061
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007972255   ⟸   XM_007974064
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007972254   ⟸   XM_007974063
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007972253   ⟸   XM_007974062
- Peptide Label: isoform X1
RefSeq Acc Id: ENSCSAP00000014044   ⟸   ENSCSAT00000016123
RefSeq Acc Id: XP_037838262   ⟸   XM_037982334
- Peptide Label: isoform X5
- UniProtKB: A0A0D9RZK5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037838261   ⟸   XM_037982333
- Peptide Label: isoform X4


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000018028 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000016123.1 UniProtKB/TrEMBL
InterPro Dymeclin UniProtKB/TrEMBL
NCBI Gene DYM ENTREZGENE
PANTHER DYMECLIN UniProtKB/TrEMBL
  PTHR12895 UniProtKB/TrEMBL
Pfam Dymeclin UniProtKB/TrEMBL
UniProt A0A0D9RZK5 ENTREZGENE, UniProtKB/TrEMBL