ZNF655 (zinc finger protein 655) - Rat Genome Database

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Gene: ZNF655 (zinc finger protein 655) Chlorocebus sabaeus
Analyze
Symbol: ZNF655
Name: zinc finger protein 655
RGD ID: 18645207
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (inferred); metal ion binding (inferred); RNA polymerase II cis-regulatory region sequence-specific DNA binding (inferred); INVOLVED IN negative regulation of G1/S transition of mitotic cell cycle (ortholog); ASSOCIATED WITH genetic disease (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN cytoplasm (ortholog); nucleolus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12813,588,503 - 13,608,647 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2813,588,032 - 13,605,131 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660702,698,133 - 2,716,964 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
nucleolus  (ISO)
nucleus  (IEA)

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
ZNF655
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12813,588,503 - 13,608,647 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2813,588,032 - 13,605,131 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660702,698,133 - 2,716,964 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ZNF655
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38799,558,642 - 99,576,453 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl799,558,406 - 99,576,453 (+)EnsemblGRCh38hg38GRCh38
GRCh37799,156,265 - 99,174,076 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36798,993,981 - 99,012,012 (+)NCBINCBI36Build 36hg18NCBI36
Build 34798,800,695 - 98,818,725NCBI
Celera793,890,274 - 93,908,309 (+)NCBICelera
Cytogenetic Map7q22.1NCBI
HuRef793,793,044 - 93,810,988 (+)NCBIHuRef
CHM1_1799,086,140 - 99,104,171 (+)NCBICHM1_1
T2T-CHM13v2.07100,797,976 - 100,815,787 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2798,515,838 - 98,533,871 (+)NCBI
Zfp655
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395145,168,503 - 145,184,116 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5145,168,525 - 145,184,112 (+)EnsemblGRCm39 Ensembl
GRCm385145,231,595 - 145,247,306 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5145,231,715 - 145,247,302 (+)EnsemblGRCm38mm10GRCm38
MGSCv375145,992,584 - 146,008,175 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365145,485,286 - 145,500,833 (+)NCBIMGSCv36mm8
Celera5142,223,521 - 142,240,529 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map585.17NCBI
Zfp655
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81214,466,006 - 14,489,049 (-)NCBIGRCr8
mRatBN7.2129,349,985 - 9,375,449 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl129,357,639 - 9,374,569 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1210,163,386 - 10,180,047 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01210,786,583 - 10,803,244 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0129,810,011 - 9,826,672 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01211,122,779 - 11,146,182 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1211,127,754 - 11,144,754 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1211,806,834 - 11,808,977 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01213,866,656 - 13,871,133 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4129,670,178 - 9,687,864 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1129,700,105 - 9,717,792 (-)NCBI
Celera1211,162,933 - 11,179,643 (-)NCBICelera
Cytogenetic Map12p11NCBI
ZNF655
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26117,415,978 - 117,433,768 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17165,680,613 - 165,698,403 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0791,531,547 - 91,549,581 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17105,033,053 - 105,051,724 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7105,033,721 - 105,051,724 (+)Ensemblpanpan1.1panPan2
ZNF655
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.169,978,125 - 9,994,715 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl69,982,293 - 9,993,404 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha611,603,997 - 11,620,801 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.069,978,085 - 9,994,891 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl69,978,088 - 9,994,642 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.169,841,451 - 9,858,256 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.069,826,317 - 9,843,105 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0610,060,716 - 10,077,515 (-)NCBIUU_Cfam_GSD_1.0
LOC101961779
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344138,093,684 - 138,111,438 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367501,833,153 - 1,853,640 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367501,833,141 - 1,853,192 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF655
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl36,504,690 - 6,521,844 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.136,504,699 - 6,521,051 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.236,532,594 - 6,548,971 (-)NCBISscrofa10.2Sscrofa10.2susScr3


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 9 51
Low 11 9
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000015899   ⟹   ENSCSAP00000013825
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2813,588,032 - 13,605,131 (-)Ensembl
RefSeq Acc Id: XM_008018634   ⟹   XP_008016825
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12813,588,503 - 13,606,872 (-)NCBI
Vero_WHO_p1.0NW_0236660702,698,274 - 2,716,964 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008018636   ⟹   XP_008016827
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12813,588,503 - 13,606,872 (-)NCBI
Vero_WHO_p1.0NW_0236660702,698,274 - 2,716,964 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008018637   ⟹   XP_008016828
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12813,600,924 - 13,608,647 (-)NCBI
Vero_WHO_p1.0NW_0236660702,698,133 - 2,704,536 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008018638   ⟹   XP_008016829
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12813,600,924 - 13,606,872 (-)NCBI
Vero_WHO_p1.0NW_0236660702,698,247 - 2,704,536 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008018641   ⟹   XP_008016832
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12813,600,924 - 13,606,872 (-)NCBI
Vero_WHO_p1.0NW_0236660702,698,274 - 2,704,536 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037990550   ⟹   XP_037846478
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660702,698,274 - 2,716,964 (+)NCBI
RefSeq Acc Id: XM_037990551   ⟹   XP_037846479
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660702,698,274 - 2,716,964 (+)NCBI
RefSeq Acc Id: XM_037990553   ⟹   XP_037846481
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660702,698,274 - 2,704,536 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_008016827   ⟸   XM_008018636
- Peptide Label: isoform X2
RefSeq Acc Id: XP_008016825   ⟸   XM_008018634
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RYY6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008016828   ⟸   XM_008018637
- Peptide Label: isoform X3
RefSeq Acc Id: XP_008016832   ⟸   XM_008018641
- Peptide Label: isoform X4
RefSeq Acc Id: XP_008016829   ⟸   XM_008018638
- Peptide Label: isoform X3
RefSeq Acc Id: ENSCSAP00000013825   ⟸   ENSCSAT00000015899
RefSeq Acc Id: XP_037846478   ⟸   XM_037990550
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RYY6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037846479   ⟸   XM_037990551
- Peptide Label: isoform X2
RefSeq Acc Id: XP_037846481   ⟸   XM_037990553
- Peptide Label: isoform X4


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000017804 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000015899.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene ZNF655 ENTREZGENE
PANTHER ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 717 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A0D9RYY6 ENTREZGENE, UniProtKB/TrEMBL