CFAP157 (cilia and flagella associated protein 157) - Rat Genome Database

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Gene: CFAP157 (cilia and flagella associated protein 157) Chlorocebus sabaeus
Analyze
Symbol: CFAP157
Name: cilia and flagella associated protein 157
RGD ID: 18636442
Description: ENCODES a protein that exhibits microtubule binding (inferred); INVOLVED IN sperm axoneme assembly (inferred); ASSOCIATED WITH congenital disorder of glycosylation Iu (ortholog); developmental and epileptic encephalopathy (ortholog); developmental and epileptic encephalopathy 31A (ortholog); FOUND IN ciliary basal body (inferred); cilium (inferred); cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cilia- and flagella-associated protein 157; uncharacterized protein C9orf117 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11210,418,854 - 10,426,739 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1210,416,855 - 10,426,124 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660795,795,159 - 5,804,205 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CFAP157
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11210,418,854 - 10,426,739 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1210,416,855 - 10,426,124 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660795,795,159 - 5,804,205 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CFAP157
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389127,706,988 - 127,716,002 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9127,706,988 - 127,716,002 (+)EnsemblGRCh38hg38GRCh38
GRCh379130,469,267 - 130,478,281 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369129,509,092 - 129,516,124 (+)NCBINCBI36Build 36hg18NCBI36
Build 349127,548,821 - 127,555,854NCBI
Celera9101,120,163 - 101,127,195 (+)NCBICelera
Cytogenetic Map9q34.11NCBI
HuRef9100,085,386 - 100,092,416 (+)NCBIHuRef
CHM1_19130,620,463 - 130,627,484 (+)NCBICHM1_1
T2T-CHM13v2.09139,913,943 - 139,922,957 (+)NCBIT2T-CHM13v2.0
Cfap157
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39232,667,425 - 32,674,417 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl232,667,393 - 32,674,440 (-)EnsemblGRCm39 Ensembl
GRCm38232,777,413 - 32,784,405 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl232,777,381 - 32,784,428 (-)EnsemblGRCm38mm10GRCm38
MGSCv37232,632,933 - 32,639,925 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36232,599,382 - 32,606,437 (-)NCBIMGSCv36mm8
Celera232,484,270 - 32,491,262 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map222.09NCBI
Cfap157
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8336,464,219 - 36,471,193 (-)NCBIGRCr8
mRatBN7.2316,066,521 - 16,073,504 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl316,066,521 - 16,073,495 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx319,134,753 - 19,141,739 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0327,719,760 - 27,726,746 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0325,971,571 - 25,978,555 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0311,813,575 - 11,820,549 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl311,813,575 - 11,820,549 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0317,150,545 - 17,157,519 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4311,751,896 - 11,759,224 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera310,806,227 - 10,813,132 (-)NCBICelera
Cytogenetic Map3p11NCBI
Cfap157
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955419942,270 - 950,922 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955419942,147 - 950,968 (-)NCBIChiLan1.0ChiLan1.0
CFAP157
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21111,639,780 - 11,648,838 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1911,642,127 - 11,651,185 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0998,825,719 - 98,834,780 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19127,497,791 - 127,504,819 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9127,497,791 - 127,506,177 (+)Ensemblpanpan1.1panPan2
CFAP157
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1955,678,266 - 55,684,757 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl955,678,264 - 55,727,680 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha954,871,482 - 54,877,371 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0956,599,727 - 56,605,609 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl956,599,725 - 56,605,551 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1955,359,965 - 55,366,082 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0955,674,680 - 55,680,562 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0955,765,924 - 55,771,807 (-)NCBIUU_Cfam_GSD_1.0
Cfap157
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947195,614,857 - 195,621,306 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648715,383,429 - 15,392,967 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648715,383,428 - 15,389,831 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CFAP157
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1268,209,187 - 268,215,859 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11268,209,190 - 268,213,909 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21302,100,692 - 302,105,712 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Cfap157
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247607,821,616 - 7,829,425 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247607,821,511 - 7,829,481 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000011850   ⟹   ENSCSAP00000009909
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1210,416,855 - 10,426,124 (-)Ensembl
RefSeq Acc Id: XM_008006148   ⟹   XP_008004339
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11210,419,320 - 10,426,739 (-)NCBI
Vero_WHO_p1.0NW_0236660795,795,159 - 5,801,687 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008006149   ⟹   XP_008004340
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11210,418,854 - 10,426,739 (-)NCBI
Vero_WHO_p1.0NW_0236660795,795,159 - 5,804,205 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008006150   ⟹   XP_008004341
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11210,418,854 - 10,426,739 (-)NCBI
Vero_WHO_p1.0NW_0236660795,795,159 - 5,802,118 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008004339 (Get FASTA)   NCBI Sequence Viewer  
  XP_008004340 (Get FASTA)   NCBI Sequence Viewer  
  XP_008004341 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000009909.1
RefSeq Acc Id: XP_008004341   ⟸   XM_008006150
- Peptide Label: isoform X3
RefSeq Acc Id: XP_008004340   ⟸   XM_008006149
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RMS0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008004339   ⟸   XM_008006148
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RMS0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000009909   ⟸   ENSCSAT00000011850


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000013752 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000011850.1 UniProtKB/TrEMBL
InterPro CFAP157 UniProtKB/TrEMBL
NCBI Gene CFAP157 ENTREZGENE
PANTHER CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 157 UniProtKB/TrEMBL
  PTHR31954 UniProtKB/TrEMBL
UniProt A0A0D9RMS0 ENTREZGENE, UniProtKB/TrEMBL