LOC103221946 (histone H3.1) - Rat Genome Database

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Gene: LOC103221946 (histone H3.1) Chlorocebus sabaeus
Analyze
Symbol: LOC103221946 (Ensembl: H3C12)
Name: histone H3.1 (Ensembl:H3 clustered histone 12)
RGD ID: 18624181
Description: ENCODES a protein that exhibits DNA binding (inferred); protein heterodimerization activity (inferred); structural constituent of chromatin (inferred); INVOLVED IN epigenetic regulation of gene expression (ortholog); gene expression (ortholog); nucleosome assembly (ortholog); FOUND IN nucleoplasm (ortholog); nucleosome (ortholog); protein-containing complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Chinchilla
Bonobo
Dog
Squirrel
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11744,720,014 - 44,721,534 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1744,659,208 - 44,659,615 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604427,481,827 - 27,482,759 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC103221946
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11744,720,014 - 44,721,534 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1744,659,208 - 44,659,615 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604427,481,827 - 27,482,759 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
H3C10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38627,810,051 - 27,810,536 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl627,810,051 - 27,811,300 (+)EnsemblGRCh38hg38GRCh38
GRCh37627,777,829 - 27,778,314 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36627,885,821 - 27,886,293 (+)NCBINCBI36Build 36hg18NCBI36
Build 34627,885,820 - 27,886,293NCBI
Celera629,383,880 - 29,384,352 (+)NCBICelera
Cytogenetic Map6p22.1NCBI
HuRef627,586,128 - 27,586,600 (+)NCBIHuRef
CHM1_1627,779,999 - 27,780,471 (+)NCBICHM1_1
T2T-CHM13v2.0627,679,725 - 27,680,210 (+)NCBIT2T-CHM13v2.0
LOC102006228
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495546513,338,289 - 13,339,268 (+)NCBIChiLan1.0ChiLan1.0
LOC100985978
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2542,456,136 - 42,457,358 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1638,457,234 - 38,457,644 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0627,642,894 - 27,644,248 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1628,316,840 - 28,318,292 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl626,720,161 - 26,720,571 (+)Ensemblpanpan1.1panPan2
H3C1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13523,975,775 - 23,977,803 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3523,977,201 - 23,977,611 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3523,854,090 - 23,856,054 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03524,090,638 - 24,092,585 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3524,092,143 - 24,092,553 (+)EnsemblROS_Cfam_1.0 Ensembl
ROS_Cfam_1.0 Ensembl3524,329,260 - 24,329,760 (+)EnsemblROS_Cfam_1.0 Ensembl
ROS_Cfam_1.0 Ensembl3525,191,411 - 25,191,821 (+)EnsemblROS_Cfam_1.0 Ensembl
ROS_Cfam_1.0 Ensembl3524,104,442 - 24,104,895 (-)EnsemblROS_Cfam_1.0 Ensembl
ROS_Cfam_1.0 Ensembl3525,239,438 - 25,239,868 (-)EnsemblROS_Cfam_1.0 Ensembl
ROS_Cfam_1.0 Ensembl3524,118,193 - 24,118,603 (+)EnsemblROS_Cfam_1.0 Ensembl
ROS_Cfam_1.0 Ensembl3525,248,685 - 25,249,095 (-)EnsemblROS_Cfam_1.0 Ensembl
ROS_Cfam_1.0 Ensembl3524,362,632 - 24,363,042 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13523,906,964 - 23,908,927 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03523,958,025 - 23,960,132 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03525,390,611 - 25,392,575 (+)NCBIUU_Cfam_GSD_1.0
LOC101956307
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946489,113 - 489,876 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366713,131,668 - 3,132,428 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
H3C6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl720,872,628 - 20,875,404 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1720,872,535 - 20,875,411 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2722,078,189 - 22,080,414 (-)NCBISscrofa10.2Sscrofa10.2susScr3


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 13 2
Low 4 7 30
Below cutoff 16 13

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000019167   ⟹   ENSCSAP00000018587
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1744,659,208 - 44,659,615 (+)Ensembl
RefSeq Acc Id: XM_038005622   ⟹   XP_037861550
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604427,481,827 - 27,482,759 (+)NCBI
Protein Sequences
Protein RefSeqs XP_037861550 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: ENSCSAP00000018587   ⟸   ENSCSAT00000019167
RefSeq Acc Id: XP_037861550   ⟸   XM_038005622
- UniProtKB: A0A0D9SCL0 (UniProtKB/TrEMBL),   A0A0D9RI14 (UniProtKB/TrEMBL),   A0A0D9SDP1 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000019077 Ensembl
NCBI Gene LOC103221946 ENTREZGENE
UniProt A0A0D9RI14 ENTREZGENE
  A0A0D9SCL0 ENTREZGENE
  A0A0D9SDP1 ENTREZGENE