PLEKHN1 (pleckstrin homology domain containing N1) - Rat Genome Database

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Gene: PLEKHN1 (pleckstrin homology domain containing N1) Chlorocebus sabaeus
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Symbol: PLEKHN1
Name: pleckstrin homology domain containing N1
RGD ID: 18621127
Description: ENCODES a protein that exhibits cardiolipin binding (inferred); phosphatidic acid binding (inferred); phosphatidylinositol phosphate binding (inferred); INVOLVED IN 3'-UTR-mediated mRNA destabilization (inferred); positive regulation of apoptotic process (inferred); response to hypoxia (inferred); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); COVID-19 (ortholog); Ehlers-Danlos syndrome spondylodysplastic type 2 (ortholog); FOUND IN cytoskeleton (inferred); mitochondrial membrane (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: pleckstrin homology domain-containing family N member 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120130,456,993 - 130,467,189 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20130,458,267 - 130,466,472 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605435,087,081 - 35,096,878 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
PLEKHN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120130,456,993 - 130,467,189 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20130,458,267 - 130,466,472 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605435,087,081 - 35,096,878 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
PLEKHN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381966,482 - 975,865 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1966,482 - 975,865 (+)EnsemblGRCh38hg38GRCh38
GRCh371901,862 - 911,245 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361891,740 - 900,351 (+)NCBINCBI36Build 36hg18NCBI36
Celera11,681,246 - 1,689,796 (-)NCBICelera
Cytogenetic Map1p36.33NCBI
HuRef1171,515 - 180,127 (+)NCBIHuRef
CHM1_11888,807 - 897,417 (+)NCBICHM1_1
T2T-CHM13v2.01395,193 - 404,574 (+)NCBIT2T-CHM13v2.0
Plekhn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394156,305,913 - 156,312,999 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4156,305,913 - 156,314,174 (-)EnsemblGRCm39 Ensembl
GRCm384156,221,456 - 156,228,542 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4156,221,456 - 156,234,857 (-)EnsemblGRCm38mm10GRCm38
MGSCv374155,595,565 - 155,602,651 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364155,595,565 - 155,601,994 (-)NCBIMGSCv36mm8
Celera4158,477,941 - 158,485,021 (-)NCBICelera
Cytogenetic Map4E2NCBI
cM Map488.63NCBI
Plekhn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85172,087,524 - 172,095,566 (-)NCBIGRCr8
mRatBN7.25166,805,309 - 166,813,339 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5166,804,837 - 166,813,155 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5169,507,532 - 169,515,247 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05171,328,916 - 171,336,631 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05171,291,477 - 171,299,192 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05173,646,055 - 173,654,140 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5173,646,195 - 173,653,905 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05177,120,095 - 177,128,194 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45173,056,074 - 173,063,784 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15173,066,841 - 173,073,718 (-)NCBI
Celera5165,007,290 - 165,015,000 (-)NCBICelera
Cytogenetic Map5q36NCBI
Plekhn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554869,737,365 - 9,744,111 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554869,736,801 - 9,744,659 (-)NCBIChiLan1.0ChiLan1.0
PLEKHN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21227,287,246 - 227,297,334 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11225,984,018 - 225,993,513 (-)NCBINHGRI_mPanPan1
PanPan1.11864,966 - 874,854 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1865,290 - 873,575 (+)Ensemblpanpan1.1panPan2
PLEKHN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1556,193,824 - 56,202,340 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl556,194,583 - 56,202,293 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha556,271,872 - 56,280,394 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0556,397,340 - 56,405,868 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl556,398,103 - 56,405,826 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1556,388,428 - 56,396,950 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0556,280,346 - 56,288,867 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0556,670,364 - 56,678,889 (+)NCBIUU_Cfam_GSD_1.0
Plekhn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505827,385,380 - 27,397,721 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049367372,072,857 - 2,079,855 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLEKHN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl663,328,605 - 63,336,138 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1663,328,054 - 63,336,140 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2657,936,303 - 57,942,555 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Plekhn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248188,537,631 - 8,544,676 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248188,537,044 - 8,545,393 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
72 33 18 31 31 59 20

Sequence


Ensembl Acc Id: ENSCSAT00000017869   ⟹   ENSCSAP00000017340
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl20130,458,267 - 130,466,472 (-)Ensembl
RefSeq Acc Id: XM_007981103   ⟹   XP_007979294
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.120130,456,993 - 130,467,189 (-)NCBI
Vero_WHO_p1.0NW_02366605435,087,081 - 35,096,878 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007979294 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000017340.1
RefSeq Acc Id: XP_007979294   ⟸   XM_007981103
- UniProtKB: A0A0D9S901 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000017340   ⟸   ENSCSAT00000017869


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000000666 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000017869.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
InterPro PH-like_dom_sf UniProtKB/TrEMBL
  PH_domain UniProtKB/TrEMBL
  PLEKHN1 UniProtKB/TrEMBL
  PLEKHN1_PH UniProtKB/TrEMBL
NCBI Gene PLEKHN1 ENTREZGENE
PANTHER PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY N MEMBER 1 UniProtKB/TrEMBL
  PTHR46882 UniProtKB/TrEMBL
SMART SM00233 UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
UniProt A0A0D9S901 ENTREZGENE, UniProtKB/TrEMBL