TPRX1 (tetrapeptide repeat homeobox 1) - Rat Genome Database

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Gene: TPRX1 (tetrapeptide repeat homeobox 1) Chlorocebus sabaeus
Analyze
Symbol: TPRX1
Name: tetrapeptide repeat homeobox 1
RGD ID: 18602593
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); INVOLVED IN maternal-to-zygotic transition of gene expression (ortholog); ASSOCIATED WITH colorectal adenocarcinoma (ortholog); Leber congenital amaurosis 7 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tetra-peptide repeat homeobox 1; tetra-peptide repeat homeobox protein 1
RGD Orthologs
Human
Bonobo
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1641,099,988 - 41,102,217 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607320,856,670 - 20,873,968 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TPRX1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1641,099,988 - 41,102,217 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607320,856,670 - 20,873,968 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
TPRX1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381947,801,232 - 47,819,051 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1947,801,232 - 47,819,051 (-)EnsemblGRCh38hg38GRCh38
GRCh371948,304,489 - 48,322,308 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361952,996,312 - 52,998,673 (-)NCBINCBI36Build 36hg18NCBI36
Celera1945,110,194 - 45,112,555 (-)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1944,730,916 - 44,733,277 (-)NCBIHuRef
CHM1_11948,306,820 - 48,309,181 (-)NCBICHM1_1
T2T-CHM13v2.01950,632,045 - 50,649,890 (-)NCBIT2T-CHM13v2.0
TPRX1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22053,951,987 - 53,973,665 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11955,821,557 - 55,843,279 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01944,795,775 - 44,813,621 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
TPRX1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11108,269,117 - 108,271,438 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1107,751,941 - 107,754,454 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01108,795,064 - 108,797,575 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11108,463,343 - 108,465,850 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01108,107,856 - 108,110,368 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01108,975,572 - 108,978,088 (+)NCBIUU_Cfam_GSD_1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_037991902   ⟹   XP_037847830
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607320,856,670 - 20,873,968 (-)NCBI
Protein Sequences
Protein RefSeqs XP_037847830 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_037847830   ⟸   XM_037991902


Additional Information

Database Acc Id Source(s)
NCBI Gene TPRX1 ENTREZGENE