TRAF3IP1 (TRAF3 interacting protein 1) - Rat Genome Database

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Gene: TRAF3IP1 (TRAF3 interacting protein 1) Chlorocebus sabaeus
Analyze
Symbol: TRAF3IP1
Name: TRAF3 interacting protein 1
RGD ID: 18598922
Description: ENCODES a protein that exhibits microtubule binding (inferred); INVOLVED IN cilium assembly (ortholog); defense response to virus (ortholog); embryonic camera-type eye development (ortholog); ASSOCIATED WITH asphyxiating thoracic dystrophy (ortholog); Bethlem Myopathy 1A (ortholog); chromosome 2q37 deletion syndrome (ortholog); FOUND IN ciliary base (ortholog); ciliary tip (ortholog); ciliary transition zone (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: TRAF3-interacting protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110124,348,763 - 124,428,522 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10124,348,916 - 124,429,716 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604074,995,510 - 75,072,036 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
TRAF3IP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110124,348,763 - 124,428,522 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10124,348,916 - 124,429,716 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604074,995,510 - 75,072,036 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
TRAF3IP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382238,320,518 - 238,400,900 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2238,320,441 - 238,400,897 (+)EnsemblGRCh38hg38GRCh38
GRCh372239,229,159 - 239,309,541 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362238,893,821 - 238,972,536 (+)NCBINCBI36Build 36hg18NCBI36
Build 342239,011,081 - 239,089,796NCBI
Celera2232,941,689 - 233,022,043 (+)NCBICelera
Cytogenetic Map2q37.3NCBI
HuRef2231,020,156 - 231,100,657 (+)NCBIHuRef
CHM1_12239,234,988 - 239,315,765 (+)NCBICHM1_1
T2T-CHM13v2.02238,810,296 - 238,891,033 (+)NCBIT2T-CHM13v2.0
Traf3ip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39191,422,311 - 91,457,029 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl191,422,369 - 91,457,029 (+)EnsemblGRCm39 Ensembl
GRCm38191,494,590 - 91,529,307 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl191,494,647 - 91,529,307 (+)EnsemblGRCm38mm10GRCm38
MGSCv37193,391,245 - 93,425,884 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36193,325,083 - 93,358,670 (+)NCBIMGSCv36mm8
Celera194,431,301 - 94,465,946 (+)NCBICelera
Cytogenetic Map1DNCBI
cM Map146.16NCBI
Traf3ip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8999,521,176 - 99,557,966 (+)NCBIGRCr8
mRatBN7.2992,073,622 - 92,110,427 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl992,073,640 - 92,108,977 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9100,500,393 - 100,535,733 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09105,636,149 - 105,671,490 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09103,999,893 - 104,035,307 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0998,621,499 - 98,658,223 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl998,621,506 - 98,656,901 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0998,297,553 - 98,334,249 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4990,711,965 - 90,747,306 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1990,916,733 - 90,952,074 (+)NCBI
Celera989,614,682 - 89,650,077 (+)NCBICelera
Cytogenetic Map9q36NCBI
Traf3ip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555422,265,901 - 2,301,215 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555422,264,472 - 2,301,083 (-)NCBIChiLan1.0ChiLan1.0
TRAF3IP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213140,959,711 - 141,041,636 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B140,974,690 - 141,056,604 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B125,558,537 - 125,637,733 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B244,404,777 - 244,481,785 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B244,405,992 - 244,481,785 (+)Ensemblpanpan1.1panPan2
TRAF3IP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12548,782,448 - 48,836,993 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2548,782,463 - 48,834,374 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2549,273,550 - 49,330,836 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02549,163,880 - 49,221,292 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2549,163,655 - 49,222,444 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12549,038,924 - 49,096,303 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02548,827,403 - 48,885,058 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02549,059,869 - 49,117,192 (+)NCBIUU_Cfam_GSD_1.0
Traf3ip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303190,765,080 - 190,824,082 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936525115,479 - 174,694 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936525115,614 - 174,641 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRAF3IP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15137,863,609 - 137,912,477 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115137,863,612 - 137,912,325 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215152,435,379 - 152,441,803 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Traf3ip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248473,424,365 - 3,472,075 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248473,424,388 - 3,469,708 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 1 13
Low 35 18 47
Below cutoff 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000004061   ⟹   ENSCSAP00000002322
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl10124,348,916 - 124,429,716 (+)Ensembl
RefSeq Acc Id: XM_038001300   ⟹   XP_037857228
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604074,995,510 - 75,072,036 (-)NCBI
Protein Sequences
Protein RefSeqs XP_037857228 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000002322.1
Reference Protein Sequences
RefSeq Acc Id: ENSCSAP00000002322   ⟸   ENSCSAT00000004061
RefSeq Acc Id: XP_037857228   ⟸   XM_038001300
- UniProtKB: A0A0D9R133 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000006023 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000004061.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.418.50 UniProtKB/TrEMBL
InterPro TRAF3IP1 UniProtKB/TrEMBL
  TRAF3IP1_C UniProtKB/TrEMBL
  TRAF3IP1_N UniProtKB/TrEMBL
  TRAF3IP1_N_sf UniProtKB/TrEMBL
NCBI Gene TRAF3IP1 ENTREZGENE
PANTHER PTHR31363 UniProtKB/TrEMBL
  TRAF3-INTERACTING PROTEIN 1 UniProtKB/TrEMBL
Pfam MIP-T3 UniProtKB/TrEMBL
  MIP-T3_C UniProtKB/TrEMBL
UniProt A0A0D9R133 ENTREZGENE, UniProtKB/TrEMBL