CDC42BPG (CDC42 binding protein kinase gamma) - Rat Genome Database

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Gene: CDC42BPG (CDC42 binding protein kinase gamma) Chlorocebus sabaeus
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Symbol: CDC42BPG
Name: CDC42 binding protein kinase gamma
RGD ID: 18593143
Description: ENCODES a protein that exhibits 3-phosphoinositide-dependent protein kinase activity (inferred); AMP-activated protein kinase activity (inferred); ATP binding (inferred); INVOLVED IN protein phosphorylation (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); glycogen storage disease V (ortholog); high grade glioma (ortholog); FOUND IN cell leading edge (inferred); centriolar satellite (inferred); cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: serine/threonine-protein kinase MRCK gamma
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.119,390,874 - 9,411,503 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl19,390,825 - 9,412,697 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038106,777,274 - 106,798,728 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CDC42BPG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.119,390,874 - 9,411,503 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl19,390,825 - 9,412,697 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038106,777,274 - 106,798,728 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CDC42BPG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381164,823,052 - 64,844,653 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1164,823,052 - 64,844,653 (-)EnsemblGRCh38hg38GRCh38
GRCh371164,590,524 - 64,612,125 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361164,348,237 - 64,368,617 (-)NCBINCBI36Build 36hg18NCBI36
Celera1161,917,813 - 61,938,195 (-)NCBICelera
Cytogenetic Map11q13.1NCBI
HuRef1160,918,707 - 60,939,096 (-)NCBIHuRef
CHM1_11164,475,451 - 64,495,843 (-)NCBICHM1_1
T2T-CHM13v2.01164,816,347 - 64,837,971 (-)NCBIT2T-CHM13v2.0
Cdc42bpg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39196,356,465 - 6,375,682 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl196,356,486 - 6,375,682 (+)EnsemblGRCm39 Ensembl
GRCm38196,306,253 - 6,325,653 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl196,306,456 - 6,325,652 (+)EnsemblGRCm38mm10GRCm38
MGSCv37196,306,457 - 6,325,652 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36196,306,448 - 6,324,573 (+)NCBIMGSCv36mm8
Celera196,179,146 - 6,198,340 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.43NCBI
Cdc42bpg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81213,037,603 - 213,057,764 (+)NCBIGRCr8
mRatBN7.21203,608,339 - 203,628,502 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1203,608,574 - 203,628,502 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1211,957,315 - 211,977,240 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01219,053,904 - 219,073,832 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01211,744,961 - 211,764,885 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01221,673,334 - 221,693,518 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1221,673,590 - 221,693,518 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01228,661,352 - 228,681,281 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41209,083,957 - 209,103,885 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11209,242,641 - 209,270,023 (+)NCBI
Celera1201,142,065 - 201,161,993 (+)NCBICelera
Cytogenetic Map1q43NCBI
Cdc42bpg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542220,331,825 - 20,349,301 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542220,331,612 - 20,350,404 (+)NCBIChiLan1.0ChiLan1.0
CDC42BPG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2966,037,817 - 66,071,145 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11167,091,783 - 67,114,113 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01160,180,468 - 60,200,719 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11163,521,521 - 63,541,784 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1163,521,521 - 63,541,784 (-)Ensemblpanpan1.1panPan2
CDC42BPG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11852,319,363 - 52,338,531 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1852,319,453 - 52,337,203 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1850,926,759 - 50,945,863 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01853,360,603 - 53,379,748 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1853,360,625 - 53,379,756 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11852,455,576 - 52,474,707 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01852,041,280 - 52,060,429 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01852,825,526 - 52,844,736 (+)NCBIUU_Cfam_GSD_1.0
Cdc42bpg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049478,039,803 - 8,055,898 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365994,482,174 - 4,497,167 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365994,481,774 - 4,498,247 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDC42BPG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl27,328,156 - 7,347,451 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.127,328,231 - 7,347,551 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.226,460,814 - 6,480,122 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Cdc42bpg
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476721,550,743 - 21,568,329 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476721,550,545 - 21,569,669 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000005438   ⟹   ENSCSAP00000003659
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl19,390,825 - 9,412,697 (+)Ensembl
RefSeq Acc Id: XM_007993336   ⟹   XP_007991527
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.119,390,874 - 9,411,503 (+)NCBI
Vero_WHO_p1.0NW_023666038106,777,274 - 106,798,728 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037999100   ⟹   XP_037855028
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666038106,779,050 - 106,798,728 (+)NCBI
RefSeq Acc Id: XM_037999101   ⟹   XP_037855029
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666038106,779,202 - 106,798,728 (+)NCBI
RefSeq Acc Id: XM_037999102   ⟹   XP_037855030
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666038106,777,817 - 106,798,728 (+)NCBI
Protein Sequences
Protein RefSeqs XP_007991527 (Get FASTA)   NCBI Sequence Viewer  
  XP_037855028 (Get FASTA)   NCBI Sequence Viewer  
  XP_037855029 (Get FASTA)   NCBI Sequence Viewer  
  XP_037855030 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000003659.1
RefSeq Acc Id: XP_007991527   ⟸   XM_007993336
- Peptide Label: isoform X1
- UniProtKB: A0A0D9R4X0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000003659   ⟸   ENSCSAT00000005438
RefSeq Acc Id: XP_037855030   ⟸   XM_037999102
- Peptide Label: isoform X2
- UniProtKB: A0A0D9R4X0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037855028   ⟸   XM_037999100
- Peptide Label: isoform X2
- UniProtKB: A0A0D9R4X0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037855029   ⟸   XM_037999101
- Peptide Label: isoform X2
- UniProtKB: A0A0D9R4X0 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000007393 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000005438.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.340 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
  3.30.60.20 UniProtKB/TrEMBL
  Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro AGC-kinase_C UniProtKB/TrEMBL
  C1-like_sf UniProtKB/TrEMBL
  CNH_dom UniProtKB/TrEMBL
  CRIB_dom UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/TrEMBL
  Myotonic_dystrophy_kinase_coil UniProtKB/TrEMBL
  PE/DAG-bd UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  PH_domain UniProtKB/TrEMBL
  Pkinase_C UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  Rho-assoc_Ser/Thr_Kinase UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/TrEMBL
KEGG Report csab:103233013 UniProtKB/TrEMBL
NCBI Gene CDC42BPG ENTREZGENE
PANTHER MYOTONIC DYSTROPHY S/T KINASE-RELATED UniProtKB/TrEMBL
  PTHR22988:SF22 UniProtKB/TrEMBL
Pfam C1_1 UniProtKB/TrEMBL
  CNH UniProtKB/TrEMBL
  DMPK_coil UniProtKB/TrEMBL
  Pkinase UniProtKB/TrEMBL
  Pkinase_C UniProtKB/TrEMBL
PROSITE AGC_KINASE_CTER UniProtKB/TrEMBL
  CNH UniProtKB/TrEMBL
  CRIB UniProtKB/TrEMBL
  PH_DOMAIN UniProtKB/TrEMBL
  PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/TrEMBL
  ZF_DAG_PE_1 UniProtKB/TrEMBL
  ZF_DAG_PE_2 UniProtKB/TrEMBL
SMART CNH UniProtKB/TrEMBL
  PBD UniProtKB/TrEMBL
  S_TK_X UniProtKB/TrEMBL
  S_TKc UniProtKB/TrEMBL
  SM00109 UniProtKB/TrEMBL
  SM00233 UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  SSF56112 UniProtKB/TrEMBL
  SSF57889 UniProtKB/TrEMBL
UniProt A0A0D9R4X0 ENTREZGENE, UniProtKB/TrEMBL