NOCT (nocturnin) - Rat Genome Database

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Gene: NOCT (nocturnin) Chlorocebus sabaeus
Analyze
Symbol: NOCT
Name: nocturnin
RGD ID: 18574199
Description: ENCODES a protein that exhibits 3'-5'-RNA exonuclease activity (inferred); catalytic activity (inferred); hydrolase activity, acting on ester bonds (inferred); INVOLVED IN circadian regulation of gene expression (inferred); circadian rhythm (inferred); deadenylation-dependent decapping of nuclear-transcribed mRNA (inferred); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN cytoplasm (inferred); mitochondrion (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1785,987,854 - 86,019,271 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl786,015,576 - 86,018,474 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603765,497,706 - 65,528,826 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
NOCTGreen MonkeyExperimental Liver Cirrhosis  ISORGD:13493489068941CTD Direct Evidence: marker/mechanismCTDPMID:25380136


Biological Process
1 to 14 of 14 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
NOCTGreen Monkeycircadian regulation of gene expression involved_inIEAUniProtKB:O35710|ensembl:ENSMUSP00000141416150520179 EnsemblGO_REF:0000107
NOCTGreen Monkeycircadian rhythm involved_inIEAUniProtKB:O35710|ensembl:ENSMUSP00000141416150520179 EnsemblGO_REF:0000107
NOCTGreen Monkeycircadian rhythm involved_inIEAInterPro:IPR034965150520179 InterProGO_REF:0000002
NOCTGreen Monkeydeadenylation-dependent decapping of nuclear-transcribed mRNA acts_upstream_of_or_withinIEAUniProtKB:O35710|ensembl:ENSMUSP00000141416150520179 EnsemblGO_REF:0000107
NOCTGreen MonkeymRNA stabilization involved_inIEAUniProtKB:O35710|ensembl:ENSMUSP00000141416150520179 EnsemblGO_REF:0000107
NOCTGreen MonkeyNADP+ metabolic process involved_inIEAUniProtKB:Q9UK39|ensembl:ENSP00000280614150520179 EnsemblGO_REF:0000107
NOCTGreen Monkeynegative regulation of gene expression involved_inIEAUniProtKB:O35710|ensembl:ENSMUSP00000141416150520179 EnsemblGO_REF:0000107
NOCTGreen Monkeynegative regulation of osteoblast differentiation involved_inIEAUniProtKB:O35710|ensembl:ENSMUSP00000141416150520179 EnsemblGO_REF:0000107
NOCTGreen Monkeynucleobase-containing compound metabolic process involved_inIEAARBA:ARBA00026572150520179 UniProtGO_REF:0000117
NOCTGreen MonkeyP-body assembly acts_upstream_of_or_withinIEAUniProtKB:O35710|ensembl:ENSMUSP00000141416150520179 EnsemblGO_REF:0000107
NOCTGreen Monkeypositive regulation of fat cell differentiation involved_inIEAUniProtKB:O35710|ensembl:ENSMUSP00000141416150520179 EnsemblGO_REF:0000107
NOCTGreen Monkeyregulation of circadian rhythm involved_inIEAUniProtKB:O35710|ensembl:ENSMUSP00000141416150520179 EnsemblGO_REF:0000107
NOCTGreen Monkeyregulation of embryonic development involved_inIEAUniProtKB:O35710|ensembl:ENSMUSP00000141416150520179 EnsemblGO_REF:0000107
NOCTGreen Monkeyresponse to lipopolysaccharide involved_inIEAUniProtKB:O35710|ensembl:ENSMUSP00000141416150520179 EnsemblGO_REF:0000107
1 to 14 of 14 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
NOCTGreen Monkeycytoplasm located_inIEAUniProtKB:O35710|ensembl:ENSMUSP00000141416150520179 EnsemblGO_REF:0000107
NOCTGreen Monkeymitochondrion located_inIEAUniProtKB:Q9UK39|ensembl:ENSP00000280614150520179 EnsemblGO_REF:0000107
NOCTGreen Monkeynucleus located_inIEAUniProtKB:O35710|ensembl:ENSMUSP00000141416150520179 EnsemblGO_REF:0000107
NOCTGreen MonkeyP-body located_inIEAUniProtKB:O35710|ensembl:ENSMUSP00000141416150520179 EnsemblGO_REF:0000107
NOCTGreen Monkeyperinuclear region of cytoplasm located_inIEAUniProtKB:O35710|ensembl:ENSMUSP00000141416150520179 EnsemblGO_REF:0000107

Molecular Function
1 to 11 of 11 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
NOCTGreen Monkey3'-5'-RNA exonuclease activity enablesIEAPANTHER:PTN000252064150520179 TreeGrafterGO_REF:0000118
NOCTGreen Monkeycatalytic activity enablesIEAInterPro:IPR005135150520179 InterProGO_REF:0000002
NOCTGreen Monkeyhydrolase activity, acting on ester bonds enablesIEAARBA:ARBA00026277150520179 UniProtGO_REF:0000117
NOCTGreen MonkeymRNA binding enablesIEAUniProtKB:O35710|ensembl:ENSMUSP00000141416150520179 EnsemblGO_REF:0000107
NOCTGreen MonkeyNADP phosphatase activity enablesIEAUniProtKB:Q9UK39|ensembl:ENSP00000280614150520179 EnsemblGO_REF:0000107
NOCTGreen MonkeyNADPH phosphatase activity enablesIEAUniProtKB:Q9UK39|ensembl:ENSP00000280614150520179 EnsemblGO_REF:0000107
NOCTGreen Monkeypoly(A)-specific ribonuclease activity enablesIEAInterPro:IPR034965150520179 InterProGO_REF:0000002
NOCTGreen Monkeypoly(A)-specific ribonuclease activity enablesIEAUniProtKB:O35710|ensembl:ENSMUSP00000141416150520179 EnsemblGO_REF:0000107
NOCTGreen Monkeyprotein binding enablesISOPR:Q60809|PR:Q640Q59068941 PMID:18625844MGIPMID:18625844
NOCTGreen Monkeyprotein binding enablesISOUniProtKB:P372389068941 PMID:20498072UniProtPMID:20498072
NOCTGreen Monkeyprotein binding enablesISOUniProtKB:Q8TEM19068941 PMID:28514442, PMID:33961781IntActPMID:28514442|PMID:33961781
1 to 11 of 11 rows

PMID:22301074  



NOCT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1785,987,854 - 86,019,271 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl786,015,576 - 86,018,474 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603765,497,706 - 65,528,826 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
NOCT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384139,015,781 - 139,045,939 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4139,015,781 - 139,045,939 (+)EnsemblGRCh38hg38GRCh38
GRCh374139,936,935 - 139,967,093 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364140,156,393 - 140,186,543 (+)NCBINCBI36Build 36hg18NCBI36
Build 344140,294,547 - 140,324,696NCBI
Celera4137,269,087 - 137,299,202 (+)NCBICelera
Cytogenetic Map4q31.1NCBI
HuRef4135,667,108 - 135,696,692 (+)NCBIHuRef
CHM1_14139,914,539 - 139,944,403 (+)NCBICHM1_1
T2T-CHM13v2.04142,335,696 - 142,365,540 (+)NCBIT2T-CHM13v2.0
Noct
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39351,131,868 - 51,159,075 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl351,131,868 - 51,159,065 (+)EnsemblGRCm39 Ensembl
GRCm38351,224,447 - 51,251,654 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl351,224,447 - 51,251,644 (+)EnsemblGRCm38mm10GRCm38
MGSCv37351,028,369 - 51,055,576 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36351,312,376 - 51,339,504 (+)NCBIMGSCv36mm8
Celera350,951,510 - 50,978,573 (+)NCBICelera
Cytogenetic Map3CNCBI
cM Map322.12NCBI
Noct
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82137,422,074 - 137,442,282 (+)NCBIGRCr8
mRatBN7.22135,271,189 - 135,291,407 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2135,271,189 - 135,291,400 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2141,847,100 - 141,867,308 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02139,959,364 - 139,979,572 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02134,590,976 - 134,611,144 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02140,286,661 - 140,306,869 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2140,286,661 - 140,306,869 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02159,759,666 - 159,779,874 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42140,120,310 - 140,140,518 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12140,086,370 - 140,089,075 (+)NCBI
Celera2129,767,090 - 129,787,298 (+)NCBICelera
Cytogenetic Map2q26NCBI
Noct
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554284,559,027 - 4,580,013 (-)NCBIChiLan1.0ChiLan1.0
NOCT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23136,888,311 - 136,920,335 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14137,280,657 - 137,312,673 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04131,378,656 - 131,409,711 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14142,691,322 - 142,719,533 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4142,691,169 - 142,719,514 (+)Ensemblpanpan1.1panPan2
NOCT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1193,587,769 - 3,612,184 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl193,588,695 - 3,609,307 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha193,837,334 - 3,867,423 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0193,659,799 - 3,692,580 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl193,659,883 - 3,693,417 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1193,591,391 - 3,621,501 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0193,953,295 - 3,983,576 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0194,317,051 - 4,347,187 (-)NCBIUU_Cfam_GSD_1.0
Noct
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530151,067,183 - 51,084,069 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365358,505,834 - 8,507,928 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365358,504,518 - 8,509,376 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NOCT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl887,885,420 - 87,909,241 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1887,885,411 - 87,909,231 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2893,480,613 - 93,503,288 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Noct
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477719,379,447 - 19,383,477 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in NOCT
710 total Variants



ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20


RefSeq Transcripts XM_007999809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007999810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JBLKOC010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000001573   ⟹   ENSCSAP00000014506
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl786,015,576 - 86,018,474 (+)Ensembl
RefSeq Acc Id: XM_007999809   ⟹   XP_007998000
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1785,987,854 - 86,019,271 (+)NCBI
Vero_WHO_p1.0NW_02366603765,497,706 - 65,528,826 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007999810   ⟹   XP_007998001
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1785,989,514 - 86,019,271 (+)NCBI
Vero_WHO_p1.0NW_02366603765,498,500 - 65,528,826 (+)NCBI
Sequence:
Protein RefSeqs XP_007998000 (Get FASTA)   NCBI Sequence Viewer  
  XP_007998001 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000014506
  ENSCSAP00000014506.1
RefSeq Acc Id: XP_007998000   ⟸   XM_007999809
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007998001   ⟸   XM_007999810
- Peptide Label: isoform X2
- UniProtKB: A0A0D9S0W7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000014506   ⟸   ENSCSAT00000001573



1 to 13 of 13 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCSAG00000003545 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000001573.1 UniProtKB/TrEMBL
Gene3D-CATH 3.60.10.10 UniProtKB/TrEMBL
InterPro CCR4/nocturin_mRNA_transcr UniProtKB/TrEMBL
  Deadenylase_nocturnin UniProtKB/TrEMBL
  Endo/exonu/phosph_ase_sf UniProtKB/TrEMBL
  Endo/exonuclease/phosphatase UniProtKB/TrEMBL
NCBI Gene NOCT ENTREZGENE
PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 UniProtKB/TrEMBL
  PTHR12121:SF45 UniProtKB/TrEMBL
Pfam Exo_endo_phos UniProtKB/TrEMBL
Superfamily-SCOP SSF56219 UniProtKB/TrEMBL
UniProt A0A0D9S0W7 ENTREZGENE, UniProtKB/TrEMBL
1 to 13 of 13 rows