RASSF5 (Ras association domain family member 5) - Rat Genome Database

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Gene: RASSF5 (Ras association domain family member 5) Chlorocebus sabaeus
Analyze
Symbol: RASSF5
Name: Ras association domain family member 5
RGD ID: 18560580
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN lymphocyte proliferation (ortholog); negative regulation of lymphocyte proliferation (ortholog); positive regulation of protein ubiquitination (ortholog); ASSOCIATED WITH autistic disorder (ortholog); familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ras association domain-containing protein 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12522,775,917 - 22,854,739 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2522,774,661 - 22,807,353 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605523,474,267 - 23,553,128 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RASSF5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12522,775,917 - 22,854,739 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2522,774,661 - 22,807,353 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605523,474,267 - 23,553,128 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
RASSF5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381206,507,531 - 206,589,448 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1206,507,531 - 206,589,448 (+)EnsemblGRCh38hg38GRCh38
GRCh371206,680,864 - 206,762,780 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361204,747,502 - 204,829,239 (+)NCBINCBI36Build 36hg18NCBI36
Celera1179,932,333 - 180,014,065 (+)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1177,379,199 - 177,460,931 (+)NCBIHuRef
CHM1_11207,953,085 - 208,034,823 (+)NCBICHM1_1
T2T-CHM13v2.01205,771,712 - 205,853,623 (+)NCBIT2T-CHM13v2.0
Rassf5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391131,104,147 - 131,172,915 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1131,104,147 - 131,172,995 (-)EnsemblGRCm39 Ensembl
GRCm381131,176,410 - 131,245,178 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1131,176,410 - 131,245,258 (-)EnsemblGRCm38mm10GRCm38
MGSCv371133,072,987 - 133,141,755 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361133,003,956 - 133,072,724 (-)NCBIMGSCv36mm8
Celera1133,798,687 - 133,867,483 (-)NCBICelera
Cytogenetic Map1E4NCBI
cM Map156.91NCBI
Rassf5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81345,189,768 - 45,255,277 (-)NCBIGRCr8
mRatBN7.21342,637,513 - 42,703,024 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1342,637,549 - 42,703,024 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1345,244,277 - 45,311,065 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01346,532,408 - 46,599,197 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01343,796,450 - 43,862,915 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01347,956,754 - 48,022,333 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1347,956,790 - 48,022,333 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01353,032,680 - 53,098,045 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41344,121,863 - 44,188,493 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11344,135,904 - 44,202,536 (-)NCBI
Celera1342,983,422 - 43,048,730 (-)NCBICelera
RH 3.4 Map13201.8RGD
Cytogenetic Map13q13NCBI
Rassf5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540642,086,081 - 42,159,204 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540642,086,081 - 42,159,204 (+)NCBIChiLan1.0ChiLan1.0
RASSF5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2142,787,046 - 42,871,019 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1142,752,573 - 42,836,547 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01182,107,396 - 182,191,346 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11186,388,571 - 186,471,134 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1186,388,571 - 186,471,134 (+)Ensemblpanpan1.1panPan2
RASSF5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1382,783,049 - 2,849,188 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl382,783,122 - 2,847,909 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha382,873,999 - 2,941,303 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0382,779,187 - 2,846,485 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl382,779,211 - 2,846,483 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1382,772,433 - 2,839,712 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0383,165,827 - 3,232,690 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0383,366,000 - 3,433,252 (+)NCBIUU_Cfam_GSD_1.0
Rassf5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934468,748,273 - 68,815,134 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365575,988,554 - 6,045,274 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365575,988,578 - 6,014,214 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RASSF5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl967,157,167 - 67,237,365 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1967,157,167 - 67,237,366 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2973,576,896 - 73,590,604 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Rassf5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248074,837,730 - 4,905,711 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248074,837,106 - 4,905,717 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000013025   ⟹   ENSCSAP00000011039
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2522,774,661 - 22,807,353 (-)Ensembl
RefSeq Acc Id: XM_007988678   ⟹   XP_007986869
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12522,775,917 - 22,854,739 (-)NCBI
Vero_WHO_p1.0NW_02366605523,474,267 - 23,553,128 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007988679   ⟹   XP_007986870
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12522,775,917 - 22,807,341 (-)NCBI
Vero_WHO_p1.0NW_02366605523,474,267 - 23,505,804 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007986869 (Get FASTA)   NCBI Sequence Viewer  
  XP_007986870 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000011039
  ENSCSAP00000011039.1
RefSeq Acc Id: XP_007986869   ⟸   XM_007988678
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007986870   ⟸   XM_007988679
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RR00 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000011039   ⟸   ENSCSAT00000013025


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000014931 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000013025.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.110 UniProtKB/TrEMBL
InterPro C-RASSF UniProtKB/TrEMBL
  RA_dom UniProtKB/TrEMBL
  RASSF5 UniProtKB/TrEMBL
  SARAH_dom UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
NCBI Gene RASSF5 ENTREZGENE
PANTHER PTHR22738 UniProtKB/TrEMBL
  PTHR22738:SF9 UniProtKB/TrEMBL
Pfam Nore1-SARAH UniProtKB/TrEMBL
  PF00788 UniProtKB/TrEMBL
PROSITE PS50200 UniProtKB/TrEMBL
  SARAH UniProtKB/TrEMBL
SMART SM00314 UniProtKB/TrEMBL
Superfamily-SCOP SSF54236 UniProtKB/TrEMBL
UniProt A0A0D9RR00 ENTREZGENE, UniProtKB/TrEMBL