RASSF5 (Ras association domain family member 5) - Rat Genome Database

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Gene: RASSF5 (Ras association domain family member 5) Pan paniscus
Analyze
Symbol: RASSF5
Name: Ras association domain family member 5
RGD ID: 11785374
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN lymphocyte proliferation (ortholog); negative regulation of lymphocyte proliferation (ortholog); positive regulation of protein ubiquitination (ortholog); ASSOCIATED WITH autistic disorder (ortholog); familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN cytoskeleton (inferred); microtubule (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ras association domain-containing protein 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2142,787,046 - 42,871,019 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1142,752,573 - 42,836,547 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01182,107,396 - 182,191,346 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11186,388,571 - 186,471,134 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1186,388,571 - 186,471,134 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoskeleton  (IEA)
microtubule  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RASSF5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2142,787,046 - 42,871,019 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1142,752,573 - 42,836,547 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01182,107,396 - 182,191,346 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11186,388,571 - 186,471,134 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1186,388,571 - 186,471,134 (+)Ensemblpanpan1.1panPan2
RASSF5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381206,507,531 - 206,589,448 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1206,507,531 - 206,589,448 (+)EnsemblGRCh38hg38GRCh38
GRCh371206,680,864 - 206,762,780 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361204,747,502 - 204,829,239 (+)NCBINCBI36Build 36hg18NCBI36
Celera1179,932,333 - 180,014,065 (+)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1177,379,199 - 177,460,931 (+)NCBIHuRef
CHM1_11207,953,085 - 208,034,823 (+)NCBICHM1_1
T2T-CHM13v2.01205,771,712 - 205,853,623 (+)NCBIT2T-CHM13v2.0
Rassf5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391131,104,147 - 131,172,915 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1131,104,147 - 131,172,995 (-)EnsemblGRCm39 Ensembl
GRCm381131,176,410 - 131,245,178 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1131,176,410 - 131,245,258 (-)EnsemblGRCm38mm10GRCm38
MGSCv371133,072,987 - 133,141,755 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361133,003,956 - 133,072,724 (-)NCBIMGSCv36mm8
Celera1133,798,687 - 133,867,483 (-)NCBICelera
Cytogenetic Map1E4NCBI
cM Map156.91NCBI
Rassf5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81345,189,768 - 45,255,277 (-)NCBIGRCr8
mRatBN7.21342,637,513 - 42,703,024 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1342,637,549 - 42,703,024 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1345,244,277 - 45,311,065 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01346,532,408 - 46,599,197 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01343,796,450 - 43,862,915 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01347,956,754 - 48,022,333 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1347,956,790 - 48,022,333 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01353,032,680 - 53,098,045 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41344,121,863 - 44,188,493 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11344,135,904 - 44,202,536 (-)NCBI
Celera1342,983,422 - 43,048,730 (-)NCBICelera
RH 3.4 Map13201.8RGD
Cytogenetic Map13q13NCBI
Rassf5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540642,086,081 - 42,159,204 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540642,086,081 - 42,159,204 (+)NCBIChiLan1.0ChiLan1.0
RASSF5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1382,783,049 - 2,849,188 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl382,783,122 - 2,847,909 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha382,873,999 - 2,941,303 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0382,779,187 - 2,846,485 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl382,779,211 - 2,846,483 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1382,772,433 - 2,839,712 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0383,165,827 - 3,232,690 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0383,366,000 - 3,433,252 (+)NCBIUU_Cfam_GSD_1.0
Rassf5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934468,748,273 - 68,815,134 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365575,988,554 - 6,045,274 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365575,988,578 - 6,014,214 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RASSF5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl967,157,167 - 67,237,365 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1967,157,167 - 67,237,366 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2973,576,896 - 73,590,604 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RASSF5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12522,775,917 - 22,854,739 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2522,774,661 - 22,807,353 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605523,474,267 - 23,553,128 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rassf5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248074,837,730 - 4,905,711 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248074,837,106 - 4,905,717 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000036689   ⟹   ENSPPAP00000014014
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1186,388,571 - 186,471,134 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000036696   ⟹   ENSPPAP00000014021
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1186,399,475 - 186,468,843 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000036703   ⟹   ENSPPAP00000014028
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1186,438,999 - 186,471,134 (+)Ensembl
RefSeq Acc Id: XM_003822922   ⟹   XP_003822970
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2142,787,046 - 42,871,019 (-)NCBI
NHGRI_mPanPan1142,752,573 - 42,836,547 (-)NCBI
Mhudiblu_PPA_v01182,107,396 - 182,191,346 (+)NCBI
PanPan1.11186,388,571 - 186,471,134 (+)NCBI
Sequence:
RefSeq Acc Id: XM_057301449   ⟹   XP_057157432
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2142,787,046 - 42,819,219 (-)NCBI
NHGRI_mPanPan1142,752,573 - 42,784,746 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003822970 (Get FASTA)   NCBI Sequence Viewer  
  XP_057157432 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000014014
  ENSPPAP00000014014.1
  ENSPPAP00000014021.1
  ENSPPAP00000014028.1
Reference Protein Sequences
RefSeq Acc Id: XP_003822970   ⟸   XM_003822922
- Peptide Label: isoform X1
- UniProtKB: A0A2R9A9R2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000014021   ⟸   ENSPPAT00000036696
RefSeq Acc Id: ENSPPAP00000014014   ⟸   ENSPPAT00000036689
RefSeq Acc Id: ENSPPAP00000014028   ⟸   ENSPPAT00000036703
RefSeq Acc Id: XP_057157432   ⟸   XM_057301449
- Peptide Label: isoform X2
- UniProtKB: A0A2R9AES7 (UniProtKB/TrEMBL)
Protein Domains
Phorbol-ester/DAG-type   Ras-associating   SARAH


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000030157 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000036689.1 UniProtKB/TrEMBL
  ENSPPAT00000036696.1 UniProtKB/TrEMBL
  ENSPPAT00000036703.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.110 UniProtKB/TrEMBL
  3.30.60.20 UniProtKB/TrEMBL
InterPro C-RASSF UniProtKB/TrEMBL
  C1-like_sf UniProtKB/TrEMBL
  PE/DAG-bd UniProtKB/TrEMBL
  RA_dom UniProtKB/TrEMBL
  RASSF5 UniProtKB/TrEMBL
  SARAH_dom UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
KEGG Report pps:100991990 UniProtKB/TrEMBL
NCBI Gene RASSF5 ENTREZGENE
PANTHER PTHR22738 UniProtKB/TrEMBL
  PTHR22738:SF9 UniProtKB/TrEMBL
Pfam C1_1 UniProtKB/TrEMBL
  Nore1-SARAH UniProtKB/TrEMBL
  PF00788 UniProtKB/TrEMBL
PROSITE PS50200 UniProtKB/TrEMBL
  SARAH UniProtKB/TrEMBL
  ZF_DAG_PE_1 UniProtKB/TrEMBL
  ZF_DAG_PE_2 UniProtKB/TrEMBL
SMART SM00109 UniProtKB/TrEMBL
  SM00314 UniProtKB/TrEMBL
Superfamily-SCOP SSF54236 UniProtKB/TrEMBL
  SSF57889 UniProtKB/TrEMBL
UniProt A0A2R9A9R2 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9AAU8_PANPA UniProtKB/TrEMBL
  A0A2R9AES7 ENTREZGENE, UniProtKB/TrEMBL