SMIM12 (small integral membrane protein 12)

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Gene: SMIM12 (small integral membrane protein 12) Chlorocebus sabaeus

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Symbol:

SMIM12

Name:

small integral membrane protein 12

RGD ID:

18549063

Description:

ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); FOUND IN mitochondrion (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	98,028,144 - 98,032,620 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	98,028,144 - 98,032,290 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666256	42,915 - 47,683 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Charcot-Marie-Tooth disease dominant intermediate C (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

membrane (IEA)

mitochondrion (ISO)

Molecular Function

protein binding (ISO)

References

Genomics

Comparative Map Data

SMIM12
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	98,028,144 - 98,032,620 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	98,028,144 - 98,032,290 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666256	42,915 - 47,683 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

SMIM12
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	34,850,362 - 34,859,749 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	34,712,737 - 34,859,755 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	35,315,963 - 35,325,350 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	35,091,711 - 35,097,934 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	33,589,547 - 33,599,002 (-)	NCBI		Celera
Cytogenetic Map	1	p34.3	NCBI
HuRef	1	33,433,527 - 33,442,967 (-)	NCBI		HuRef
CHM1_1	1	35,431,467 - 35,440,901 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	34,712,985 - 34,722,442 (-)	NCBI		T2T-CHM13v2.0

Smim12
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	127,137,577 - 127,141,602 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	127,137,577 - 127,141,602 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	127,243,784 - 127,247,809 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	127,243,784 - 127,247,809 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	126,921,028 - 126,925,053 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	126,746,145 - 126,750,113 (+)	NCBI		MGSCv36	mm8
Celera	4	125,578,251 - 125,582,269 (+)	NCBI		Celera
Cytogenetic Map	4	D2.2	NCBI
cM Map	4	61.41	NCBI

Smim12
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	144,853,887 - 144,857,746 (+)	NCBI		GRCr8
mRatBN7.2	5	139,569,367 - 139,573,276 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	139,569,391 - 139,574,320 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	142,264,872 - 142,268,683 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	144,034,870 - 144,038,681 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	144,035,643 - 144,039,454 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	145,311,317 - 145,315,185 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	145,311,375 - 145,315,185 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	149,080,643 - 149,084,601 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	146,692,300 - 146,696,110 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	138,063,425 - 138,067,235 (+)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

Smim12
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955452	12,972,797 - 12,976,962 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955452	12,972,797 - 12,976,963 (-)	NCBI	ChiLan1.0	ChiLan1.0

SMIM12
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	191,986,403 - 191,991,175 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	191,107,515 - 191,113,869 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	34,121,669 - 34,126,465 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1 Ensembl	1	35,303,890 - 35,304,168 (-)	Ensembl	panpan1.1		panPan2

SMIM12
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	7,121,532 - 7,126,450 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	7,121,189 - 7,126,450 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	7,360,099 - 7,364,782 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	7,266,656 - 7,271,543 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	7,270,619 - 7,271,543 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	7,129,342 - 7,134,017 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	7,177,167 - 7,182,038 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	7,191,291 - 7,196,173 (+)	NCBI		UU_Cfam_GSD_1.0

Smim12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	51,662,093 - 51,667,022 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	17,486,894 - 17,487,982 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	17,486,883 - 17,491,222 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SMIM12
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	91,109,698 - 91,109,976 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	91,109,044 - 91,113,686 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

Smim12
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624764	17,894,153 - 17,897,758 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624764	17,894,154 - 17,897,796 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
76	36	20	36	36	60	20

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007979475	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007979476	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007979477	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000224	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000017456 ⟹ ENSCSAP00000016936

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	20	98,028,144 - 98,032,290 (+)	Ensembl

RefSeq Acc Id:

XM_007979475 ⟹ XP_007977666

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	20	98,028,144 - 98,032,620 (+)	NCBI
Vero_WHO_p1.0	NW_023666256	42,915 - 47,608 (-)	NCBI

Sequence:

show sequence

GCGACTTCCGTGCTCCCGGCGAGCGGGCGGAGAGCGGGGGCCACACTGGGGAGTGTGGGCTGGG
CCGCAGGTGAGCGCGCGGTCCCGGCGAGCAGGTGCGGTCAGCCCAGGCCCGTAACCTCTGAGTT
ACGGGAGGAGTGATCGCTAGGGTCCACCCCGGTCCCGGCCAGACCTGCCAGCCCCACTGTCTGG
CGGGTGCTCTGGTGCCCAGTCTGGCAGCCCAGGTAGCCCTCCGCAGACAGGGCTTATCGGCACC
TCAGTGAGGACGGACGTTGATGAGGCCACGAATGAGATGTCATGTGGCCTGTGTTTTGGACCGT
GGTTCGTACCTATGCTCCTTATGTCACATTCCCTGTTGCCTTCGTGGTCGGGGCTGTGGGCTAC
CACCTGGAATGGTTCATCAGGGGAAAGGACCCCCAGCCCGTGGAGGAGGAAAAGAGCATCTCAG
AGCGCCGGGAGGATCGCAAGCTGGATGAGCTTCTAGGCAAGGACCACACGCAGGTGGTGAGCCT
TAAGGACAAGCTAGAATTTGCCCCGAAAGCTGTGCTGAACAGAAACCGCCCAGAGAAGAATTGA
TGGAGGACACAGGGCCCTACGGTCCTACTGTGGGCGGTGACTTGTCCTGCTACCATGTTGACAG
AGCCCCAGAACCCACATCTAATTGGCTTTGTTGCTTATTCTGGCCCCTCCCACACCACACAGCC
ACACAAATACTGGCTGCTCCTTGATGTCCAGGCAGACCCAGCGGCAGCCAAAGGGCCAGTGAAG
AGGAAGGCCGCATCTGTTGTGTGGTGGCCACAAGCACTCAGGCATCTGAGTTTACTGGTGCACT
GCTGGGAGGAGTGTTATGAGATGAACGTTGGCTGTCAATCTTTGTGGGCAGGTGGTTTGGCCTT
GAGTGGGAATGGCTGGGATTTGGGTGTTGCCTTTAGGAGGGATACCTGCATGTCTAGTTCCAGT
CTGCACTGGGAAGAATTCAAATATGCACCTGGCTCCCTTCACTGTTTTGCCCTA

hide sequence

RefSeq Acc Id:

XM_007979476 ⟹ XP_007977667

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	20	98,028,215 - 98,032,620 (+)	NCBI
Vero_WHO_p1.0	NW_023666256	42,915 - 47,611 (-)	NCBI

Sequence:

show sequence

TGAGCGCGCGGTCCCGGCGAGCAGATGTCATGTGGCCTGTGTTTTGGACCGTGGTTCGTACCTA
TGCTCCTTATGTCACATTCCCTGTTGCCTTCGTGGTCGGGGCTGTGGGCTACCACCTGGAATGG
TTCATCAGGGGAAAGGACCCCCAGCCCGTGGAGGAGGAAAAGAGCATCTCAGAGCGCCGGGAGG
ATCGCAAGCTGGATGAGCTTCTAGGCAAGGACCACACGCAGGTGGTGAGCCTTAAGGACAAGCT
AGAATTTGCCCCGAAAGCTGTGCTGAACAGAAACCGCCCAGAGAAGAATTGATGGAGGACACAG
GGCCCTACGGTCCTACTGTGGGCGGTGACTTGTCCTGCTACCATGTTGACAGAGCCCCAGAACC
CACATCTAATTGGCTTTGTTGCTTATTCTGGCCCCTCCCACACCACACAGCCACACAAATACTG
GCTGCTCCTTGATGTCCAGGCAGACCCAGCGGCAGCCAAAGGGCCAGTGAAGAGGAAGGCCGCA
TCTGTTGTGTGGTGGCCACAAGCACTCAGGCATCTGAGTTTACTGGTGCACTGCTGGGAGGAGT
GTTATGAGATGAACGTTGGCTGTCAATCTTTGTGGGCAGGTGGTTTGGCCTTGAGTGGGAATGG
CTGGGATTTGGGTGTTGCCTTTAGGAGGGATACCTGCATGTCTAGTTCCAGTCTGCACTGGGAA
GAATTCAAATATGCACCTGGCTCCCTTCACTGTTTTGCCCTA

hide sequence

RefSeq Acc Id:

XM_007979477 ⟹ XP_007977668

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	20	98,028,187 - 98,032,620 (+)	NCBI
Vero_WHO_p1.0	NW_023666256	42,915 - 47,683 (-)	NCBI

Sequence:

show sequence

CACTGGGGAGTGTGGGCTGGGCCGCAGATGTCATGTGGCCTGTGTTTTGGACCGTGGTTCGTAC
CTATGCTCCTTATGTCACATTCCCTGTTGCCTTCGTGGTCGGGGCTGTGGGCTACCACCTGGAA
TGGTTCATCAGGGGAAAGGACCCCCAGCCCGTGGAGGAGGAAAAGAGCATCTCAGAGCGCCGGG
AGGATCGCAAGCTGGATGAGCTTCTAGGCAAGGACCACACGCAGGTGGTGAGCCTTAAGGACAA
GCTAGAATTTGCCCCGAAAGCTGTGCTGAACAGAAACCGCCCAGAGAAGAATTGATGGAGGACA
CAGGGCCCTACGGTCCTACTGTGGGCGGTGACTTGTCCTGCTACCATGTTGACAGAGCCCCAGA
ACCCACATCTAATTGGCTTTGTTGCTTATTCTGGCCCCTCCCACACCACACAGCCACACAAATA
CTGGCTGCTCCTTGATGTCCAGGCAGACCCAGCGGCAGCCAAAGGGCCAGTGAAGAGGAAGGCC
GCATCTGTTGTGTGGTGGCCACAAGCACTCAGGCATCTGAGTTTACTGGTGCACTGCTGGGAGG
AGTGTTATGAGATGAACGTTGGCTGTCAATCTTTGTGGGCAGGTGGTTTGGCCTTGAGTGGGAA
TGGCTGGGATTTGGGTGTTGCCTTTAGGAGGGATACCTGCATGTCTAGTTCCAGTCTGCACTGG
GAAGAATTCAAATATGCACCTGGCTCCCTTCACTGTTTTGCCCTA

hide sequence

Protein Sequences


Protein RefSeqs	XP_007977666	(Get FASTA)	NCBI Sequence Viewer
	XP_007977667	(Get FASTA)	NCBI Sequence Viewer
	XP_007977668	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000016936
	ENSCSAP00000016936.1

RefSeq Acc Id:	XP_007977666 ⟸ XM_007979475
- UniProtKB:	A0A0D9S7U7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007977668 ⟸ XM_007979477
- UniProtKB:	A0A0D9S7U7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007977667 ⟸ XM_007979476
- UniProtKB:	A0A0D9S7U7 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCSAP00000016936 ⟸ ENSCSAT00000017456

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000001077	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000017456.1	UniProtKB/TrEMBL
InterPro	UPF0767	UniProtKB/TrEMBL
KEGG Report	csab:103225144	UniProtKB/TrEMBL
NCBI Gene	SMIM12	ENTREZGENE
PANTHER	PTHR28599	UniProtKB/TrEMBL
	SMALL INTEGRAL MEMBRANE PROTEIN 12	UniProtKB/TrEMBL
Pfam	UPF0767	UniProtKB/TrEMBL
UniProt	A0A0D9S7U7	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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