SLC6A19 (solute carrier family 6 member 19) - Rat Genome Database

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Gene: SLC6A19 (solute carrier family 6 member 19) Chlorocebus sabaeus
Analyze
Symbol: SLC6A19
Name: solute carrier family 6 member 19
RGD ID: 18535842
Description: ENCODES a protein that exhibits metal ion binding (inferred); neutral L-amino acid transmembrane transporter activity (inferred); symporter activity (inferred); INVOLVED IN neutral amino acid transport (ortholog); response to nutrient (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 2 (ortholog); dopamine transporter deficiency syndrome (ortholog); genetic disease (ortholog); FOUND IN apical plasma membrane (inferred); brush border membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sodium-dependent neutral amino acid transporter B(0)AT1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.141,031,236 - 1,053,815 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl41,033,125 - 1,056,843 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605435,594,889 - 35,615,960 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SLC6A19
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.141,031,236 - 1,053,815 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl41,033,125 - 1,056,843 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605435,594,889 - 35,615,960 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SLC6A19
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3851,201,595 - 1,225,111 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl51,201,595 - 1,225,111 (+)EnsemblGRCh38hg38GRCh38
GRCh3751,201,710 - 1,225,226 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3651,254,766 - 1,275,019 (+)NCBINCBI36Build 36hg18NCBI36
Celera51,238,608 - 1,262,115 (+)NCBICelera
Cytogenetic Map5p15.33NCBI
HuRef51,183,086 - 1,206,530 (+)NCBIHuRef
CHM1_151,198,248 - 1,225,118 (+)NCBICHM1_1
T2T-CHM13v2.051,108,484 - 1,132,085 (+)NCBIT2T-CHM13v2.0
Slc6a19
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391373,827,864 - 73,848,899 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1373,827,864 - 73,852,984 (-)EnsemblGRCm39 Ensembl
GRCm381373,679,745 - 73,700,780 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1373,679,745 - 73,704,865 (-)EnsemblGRCm38mm10GRCm38
MGSCv371373,818,605 - 73,838,143 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361374,147,159 - 74,166,697 (-)NCBIMGSCv36mm8
Celera1376,010,112 - 76,029,756 (-)NCBICelera
Cytogenetic Map13C1NCBI
cM Map1340.14NCBI
Slc6a19
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8131,414,744 - 31,434,932 (+)NCBIGRCr8
mRatBN7.2129,586,191 - 29,604,964 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl129,586,195 - 29,604,962 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx129,387,324 - 29,406,097 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0135,387,174 - 35,405,947 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0129,587,954 - 29,606,725 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0132,199,869 - 32,218,628 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl132,199,810 - 32,220,045 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0133,624,561 - 33,643,496 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4130,393,331 - 30,412,094 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera128,234,184 - 28,252,964 (+)NCBICelera
Cytogenetic Map1p11NCBI
Slc6a19
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955504616,768 - 633,654 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955504617,683 - 633,594 (+)NCBIChiLan1.0ChiLan1.0
SLC6A19
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v241,461,963 - 1,482,056 (+)NCBINHGRI_mPanPan1-v2
PanPan1.1 Ensembl51,248,802 - 1,272,508 (+)Ensemblpanpan1.1panPan2
SLC6A19
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13411,329,126 - 11,344,248 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3411,329,111 - 11,344,293 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3415,838,998 - 15,854,198 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03411,229,799 - 11,244,920 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3411,229,784 - 11,244,965 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13411,280,591 - 11,295,588 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03411,260,140 - 11,275,298 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03411,471,162 - 11,486,159 (-)NCBIUU_Cfam_GSD_1.0
Slc6a19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213244,352,755 - 244,371,592 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936815515,762 - 532,917 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936815515,928 - 532,877 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC6A19
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1679,293,943 - 79,310,922 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11679,293,940 - 79,310,922 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21685,952,505 - 85,969,441 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Slc6a19
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624751591,754 - 607,693 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624751591,846 - 606,362 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
5 1 18 18 18 5 1

Sequence


Ensembl Acc Id: ENSCSAT00000015487   ⟹   ENSCSAP00000013426
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl41,033,125 - 1,056,843 (+)Ensembl
RefSeq Acc Id: XM_007961127   ⟹   XP_007959318
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.141,031,236 - 1,053,815 (+)NCBI
Vero_WHO_p1.0NW_02366605435,594,889 - 35,615,960 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007959318 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000013426.1
RefSeq Acc Id: XP_007959318   ⟸   XM_007961127
- UniProtKB: A0A0D9RXT7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000013426   ⟸   ENSCSAT00000015487


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000017393 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000015487.1 UniProtKB/TrEMBL
InterPro Na/ntran_symport UniProtKB/TrEMBL
  Neutral_aa_SLC6 UniProtKB/TrEMBL
  SNS_sf UniProtKB/TrEMBL
NCBI Gene SLC6A19 ENTREZGENE
PANTHER PTHR11616 UniProtKB/TrEMBL
  SODIUM-DEPENDENT NEUTRAL AMINO ACID TRANSPORTER B(0)AT1 UniProtKB/TrEMBL
Pfam SNF UniProtKB/TrEMBL
PRINTS NANEUSMPORT UniProtKB/TrEMBL
  ORPHTRNSPORT UniProtKB/TrEMBL
PROSITE NA_NEUROTRAN_SYMP_1 UniProtKB/TrEMBL
  NA_NEUROTRAN_SYMP_2 UniProtKB/TrEMBL
  NA_NEUROTRAN_SYMP_3 UniProtKB/TrEMBL
Superfamily-SCOP SSF161070 UniProtKB/TrEMBL
UniProt A0A0D9RXT7 ENTREZGENE, UniProtKB/TrEMBL