LOC103227011 (60S ribosomal protein L35a-like) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: LOC103227011 (60S ribosomal protein L35a-like) Chlorocebus sabaeus
Analyze
Symbol: LOC103227011
Name: 60S ribosomal protein L35a-like
RGD ID: 18529090
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN cytoplasmic translation (inferred); ribosomal large subunit biogenesis (inferred); translation (inferred); FOUND IN cytosolic large ribosomal subunit (inferred); ribonucleoprotein complex (inferred); ribosome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L35a pseudogene
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121109,089,302 - 109,089,752 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660725,739,511 - 5,739,978 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 34 8 36
Low 2 12 24
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: XM_037991159   ⟹   XP_037847087
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660725,739,511 - 5,739,978 (-)NCBI
Protein Sequences
Protein RefSeqs XP_037847087 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000018659.1
Reference Protein Sequences
RefSeq Acc Id: XP_037847087   ⟸   XM_037991159
- UniProtKB: A0A0D9SCS0 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000019149 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000019239.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.10.190 UniProtKB/TrEMBL
InterPro L35A_sf UniProtKB/TrEMBL
  Ribosomal_L35A UniProtKB/TrEMBL
  Ribosomal_L35Ae_CS UniProtKB/TrEMBL
  Transl_B-barrel_sf UniProtKB/TrEMBL
NCBI Gene LOC103227011 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L35A UniProtKB/TrEMBL
  PTHR10902 UniProtKB/TrEMBL
Pfam Ribosomal_L35Ae UniProtKB/TrEMBL
PROSITE RIBOSOMAL_L35AE UniProtKB/TrEMBL
Superfamily-SCOP SSF50447 UniProtKB/TrEMBL
UniProt A0A0D9SCS0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-08 LOC103227011  60S ribosomal protein L35a-like  LOC103227011  60S ribosomal protein L35a pseudogene  Symbol and/or name change 5135510 APPROVED