TTLL10 (tubulin tyrosine ligase like 10) - Rat Genome Database

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Gene: TTLL10 (tubulin tyrosine ligase like 10) Chlorocebus sabaeus
Analyze
Symbol: TTLL10
Name: tubulin tyrosine ligase like 10
RGD ID: 18510279
Description: ENCODES a protein that exhibits protein-glycine ligase activity (ortholog); INVOLVED IN protein polyglycylation (ortholog); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); congenital myasthenic syndrome 8 (ortholog); dilated cardiomyopathy 1LL (ortholog); FOUND IN axoneme (ortholog); cilium (ortholog); microtubule cytoskeleton (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: inactive polyglycylase TTLL10
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120130,247,309 - 130,270,452 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605434,816,286 - 34,840,974 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
TTLL10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120130,247,309 - 130,270,452 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605434,816,286 - 34,840,974 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
TTLL10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811,173,880 - 1,197,936 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11,173,880 - 1,197,936 (+)EnsemblGRCh38hg38GRCh38
GRCh3711,109,260 - 1,133,316 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611,104,940 - 1,111,104 (+)NCBINCBI36Build 36hg18NCBI36
Celera11,449,545 - 1,473,572 (-)NCBICelera
Cytogenetic Map1p36.33NCBI
HuRef1380,667 - 405,028 (+)NCBIHuRef
CHM1_111,096,258 - 1,120,338 (+)NCBICHM1_1
T2T-CHM13v2.01602,477 - 626,317 (+)NCBIT2T-CHM13v2.0
Ttll10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394156,119,292 - 156,135,274 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4156,119,297 - 156,143,871 (-)EnsemblGRCm39 Ensembl
GRCm384156,034,835 - 156,050,817 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4156,034,840 - 156,059,414 (-)EnsemblGRCm38mm10GRCm38
MGSCv374155,408,946 - 155,424,926 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364154,878,635 - 154,903,144 (-)NCBIMGSCv36mm8
Celera4158,297,379 - 158,313,214 (-)NCBICelera
Cytogenetic Map4E2NCBI
cM Map487.82NCBI
Ttll10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85171,912,371 - 171,937,733 (-)NCBIGRCr8
mRatBN7.25166,630,147 - 166,644,114 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5166,630,152 - 166,653,707 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5169,333,682 - 169,347,676 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05171,155,103 - 171,169,098 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05171,117,637 - 171,131,632 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05173,471,020 - 173,517,783 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5173,471,010 - 173,484,986 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05176,943,171 - 176,991,593 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45172,879,873 - 172,893,840 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5164,830,952 - 164,844,917 (-)NCBICelera
Cytogenetic Map5q36NCBI
Ttll10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554869,576,174 - 9,589,297 (-)NCBIChiLan1.0ChiLan1.0
TTLL10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21227,028,822 - 227,053,429 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11225,727,108 - 225,751,687 (-)NCBINHGRI_mPanPan1
PanPan1.111,131,691 - 1,143,449 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11,131,691 - 1,155,349 (+)Ensemblpanpan1.1panPan2
TTLL10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1556,364,247 - 56,390,899 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl556,336,884 - 56,388,693 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha556,441,173 - 56,467,874 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0556,567,076 - 56,593,786 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl556,567,098 - 56,593,789 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1556,557,918 - 56,584,529 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0556,450,101 - 56,476,816 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0556,840,094 - 56,866,804 (+)NCBIUU_Cfam_GSD_1.0
Ttll10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505827,537,402 - 27,550,174 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049367371,910,286 - 1,926,061 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TTLL10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl663,497,597 - 63,511,918 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1663,494,759 - 63,513,884 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2658,031,709 - 58,042,565 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Ttll10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248188,382,673 - 8,389,891 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_037985230   ⟹   XP_037841158
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605434,816,286 - 34,840,776 (-)NCBI
RefSeq Acc Id: XM_037985231   ⟹   XP_037841159
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605434,816,289 - 34,840,776 (-)NCBI
RefSeq Acc Id: XM_037985232   ⟹   XP_037841160
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605434,816,289 - 34,840,776 (-)NCBI
RefSeq Acc Id: XM_037985233   ⟹   XP_037841161
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605434,816,289 - 34,840,773 (-)NCBI
RefSeq Acc Id: XM_037985234   ⟹   XP_037841162
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605434,826,193 - 34,840,974 (-)NCBI
RefSeq Acc Id: XM_037985235   ⟹   XP_037841163
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605434,816,289 - 34,840,776 (-)NCBI
RefSeq Acc Id: XM_037985236   ⟹   XP_037841164
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605434,816,289 - 34,840,776 (-)NCBI
RefSeq Acc Id: XM_037985238   ⟹   XP_037841166
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605434,816,289 - 34,840,776 (-)NCBI
RefSeq Acc Id: XP_037841158   ⟸   XM_037985230
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037841159   ⟸   XM_037985231
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037841166   ⟸   XM_037985238
- Peptide Label: isoform X5
- UniProtKB: A0A0D9S8Z5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037841160   ⟸   XM_037985232
- Peptide Label: isoform X2
- UniProtKB: A0A0D9S8Z5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037841163   ⟸   XM_037985235
- Peptide Label: isoform X5
- UniProtKB: A0A0D9S8Z5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037841164   ⟸   XM_037985236
- Peptide Label: isoform X5
- UniProtKB: A0A0D9S8Z5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037841161   ⟸   XM_037985233
- Peptide Label: isoform X3
RefSeq Acc Id: XP_037841162   ⟸   XM_037985234
- Peptide Label: isoform X4


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000000672 UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000017863.1 UniProtKB/TrEMBL
Gene3D-CATH ATP-grasp fold, B domain UniProtKB/TrEMBL
InterPro TTL/TTLL_fam UniProtKB/TrEMBL
  TTLL10 UniProtKB/TrEMBL
NCBI Gene TTLL10 ENTREZGENE
PANTHER INACTIVE POLYGLYCYLASE TTLL10 UniProtKB/TrEMBL
  INACTIVE POLYGLYCYLASE TTLL10 UniProtKB/TrEMBL
Pfam TTL UniProtKB/TrEMBL
PROSITE TTL UniProtKB/TrEMBL
Superfamily-SCOP Glutathione synthetase ATP-binding domain-like UniProtKB/TrEMBL
UniProt A0A0D9S8Z5 ENTREZGENE, UniProtKB/TrEMBL