CLEC4C (C-type lectin domain family 4 member C) - Rat Genome Database

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Gene: CLEC4C (C-type lectin domain family 4 member C) Chlorocebus sabaeus
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Symbol: CLEC4C
Name: C-type lectin domain family 4 member C
RGD ID: 18507677
Description: INVOLVED IN positive regulation of release of sequestered calcium ion into cytosol (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 21 (ortholog); Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); Klippel-Feil syndrome 3 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C-type lectin domain family 4 member C-like; LOC103218511; LOC103218865
RGD Orthologs
Human
Mouse
Rat
Bonobo
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1117,763,993 - 7,777,474 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666063420,139 - 438,195 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

Genomics

Comparative Map Data
CLEC4C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1117,763,993 - 7,777,474 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666063420,139 - 438,195 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CLEC4C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38127,729,383 - 7,749,541 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl127,729,383 - 7,751,605 (-)EnsemblGRCh38hg38GRCh38
GRCh37127,881,979 - 7,902,137 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36127,773,278 - 7,793,336 (-)NCBINCBI36Build 36hg18NCBI36
Build 34127,773,277 - 7,793,336NCBI
Celera129,460,129 - 9,480,185 (-)NCBICelera
Cytogenetic Map12p13.31NCBI
HuRef127,695,951 - 7,715,928 (-)NCBIHuRef
CHM1_1127,881,365 - 7,901,416 (-)NCBICHM1_1
T2T-CHM13v2.0127,744,033 - 7,766,234 (-)NCBIT2T-CHM13v2.0
Clec4b1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396123,026,921 - 123,048,514 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6123,026,921 - 123,048,514 (+)EnsemblGRCm39 Ensembl
GRCm386123,049,962 - 123,071,555 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6123,049,962 - 123,071,555 (+)EnsemblGRCm38mm10GRCm38
MGSCv376122,999,980 - 123,021,573 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366123,015,625 - 123,037,163 (+)NCBIMGSCv36mm8
Celera6124,848,702 - 124,870,208 (+)NCBICelera
Cytogenetic Map6F2NCBI
cM Map658.13NCBI
Clec4b2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84158,148,434 - 158,171,933 (+)NCBIGRCr8
mRatBN7.24156,462,742 - 156,486,240 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4156,462,742 - 156,486,240 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4162,717,368 - 162,751,741 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04158,500,244 - 158,534,620 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04157,145,669 - 157,180,032 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04156,107,720 - 156,131,226 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4156,107,620 - 156,131,583 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04223,124,392 - 223,147,898 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44159,745,231 - 159,769,388 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14159,990,168 - 160,014,324 (+)NCBI
Celera4145,262,587 - 145,286,094 (+)NCBICelera
Cytogenetic Map4q42NCBI
CLEC4C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21013,285,369 - 13,308,446 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11213,282,128 - 13,305,205 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0127,852,796 - 7,873,559 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1128,012,508 - 8,030,409 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl128,012,508 - 8,030,370 (-)Ensemblpanpan1.1panPan2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_037988328   ⟹   XP_037844256
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666063420,139 - 438,195 (+)NCBI
Protein Sequences
Protein RefSeqs XP_037844256 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_037844256   ⟸   XM_037988328


Additional Information

Database Acc Id Source(s)
NCBI Gene LOC103218865 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-08 CLEC4C  C-type lectin domain family 4 member C  LOC103218865  C-type lectin domain family 4 member C-like  Symbol and/or name change 5135510 APPROVED
2020-12-03 LOC103218865  C-type lectin domain family 4 member C-like  LOC103218511  C-type lectin domain family 4 member C-like  Data merged from RGD:18647778 737654 PROVISIONAL