CEP57 (centrosomal protein 57) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: CEP57 (centrosomal protein 57) Chlorocebus sabaeus
Analyze
Symbol: CEP57
Name: centrosomal protein 57
RGD ID: 18507626
Description: ENCODES a protein that exhibits fibroblast growth factor binding (inferred); gamma-tubulin binding (inferred); identical protein binding (inferred); INVOLVED IN fibroblast growth factor receptor signaling pathway (inferred); protein homooligomerization (inferred); spermatid development (inferred); ASSOCIATED WITH ataxia telangiectasia (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN centriolar satellite (inferred); centrosome (inferred); cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: centrosomal protein of 57 kDa
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1187,046,915 - 87,088,999 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl187,046,639 - 87,093,786 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604338,725,753 - 38,769,778 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CEP57
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1187,046,915 - 87,088,999 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl187,046,639 - 87,093,786 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604338,725,753 - 38,769,778 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CEP57
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381195,790,498 - 95,832,693 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1195,789,965 - 95,832,693 (+)EnsemblGRCh38hg38GRCh38
GRCh371195,523,662 - 95,565,857 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361195,163,290 - 95,205,502 (+)NCBINCBI36Build 36hg18NCBI36
Celera1192,822,024 - 92,864,242 (+)NCBICelera
Cytogenetic Map11q21NCBI
HuRef1191,589,397 - 91,631,656 (+)NCBIHuRef
CHM1_11195,406,634 - 95,448,873 (+)NCBICHM1_1
T2T-CHM13v2.01195,797,891 - 95,840,118 (+)NCBIT2T-CHM13v2.0
Cep57
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39913,717,979 - 13,738,698 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl913,719,088 - 13,738,403 (-)EnsemblGRCm39 Ensembl
GRCm38913,807,783 - 13,827,407 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl913,807,792 - 13,827,107 (-)EnsemblGRCm38mm10GRCm38
MGSCv37913,612,232 - 13,631,537 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36913,558,192 - 13,577,449 (-)NCBIMGSCv36mm8
Celera911,086,224 - 11,105,529 (-)NCBICelera
Cytogenetic Map9A1NCBI
cM Map93.49NCBI
Cep57
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8818,951,179 - 18,971,205 (-)NCBIGRCr8
mRatBN7.2810,669,588 - 10,689,257 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl810,669,590 - 10,689,249 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx814,656,395 - 14,676,043 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0812,954,121 - 12,973,769 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0810,930,498 - 10,950,158 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0812,335,430 - 12,355,425 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl812,335,432 - 12,355,091 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0812,285,706 - 12,305,716 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4810,608,688 - 10,627,914 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1810,608,258 - 10,628,586 (-)NCBI
Celera812,170,101 - 12,189,763 (-)NCBICelera
Cytogenetic Map8q12NCBI
Cep57
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955412638,718 - 693,837 (+)NCBIChiLan1.0ChiLan1.0
CEP57
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2996,635,265 - 96,796,834 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11197,727,216 - 97,888,280 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01190,795,277 - 90,838,166 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11194,322,862 - 94,365,643 (+)NCBIpanpan1.1PanPan1.1panPan2
CEP57
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1215,314,290 - 5,360,474 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl215,314,449 - 5,361,154 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha215,306,946 - 5,372,017 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0215,470,572 - 5,535,631 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl215,489,231 - 5,535,379 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1215,265,268 - 5,330,343 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0215,326,888 - 5,391,987 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0215,374,577 - 5,439,676 (-)NCBIUU_Cfam_GSD_1.0
Cep57
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494780,630,996 - 80,670,623 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367001,875,795 - 1,915,003 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367001,874,509 - 1,914,688 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CEP57
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl927,812,929 - 27,859,568 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1927,812,944 - 27,858,293 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2931,728,611 - 31,738,258 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Cep57
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473540,647,104 - 40,670,640 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000001312   ⟹   ENSCSAP00000014763
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl187,046,639 - 87,093,786 (+)Ensembl
RefSeq Acc Id: XM_008020600   ⟹   XP_008018791
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1187,046,915 - 87,088,999 (+)NCBI
Vero_WHO_p1.0NW_02366604338,725,753 - 38,769,613 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008020602   ⟹   XP_008018793
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1187,046,915 - 87,088,964 (+)NCBI
Vero_WHO_p1.0NW_02366604338,727,865 - 38,769,613 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038005300   ⟹   XP_037861228
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604338,727,865 - 38,769,613 (-)NCBI
RefSeq Acc Id: XM_038005301   ⟹   XP_037861229
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604338,727,865 - 38,769,778 (-)NCBI
RefSeq Acc Id: XM_038005302   ⟹   XP_037861230
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604338,727,865 - 38,768,999 (-)NCBI
RefSeq Acc Id: XP_008018791   ⟸   XM_008020600
- Peptide Label: isoform X1
- UniProtKB: A0A0D9S1M4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008018793   ⟸   XM_008020602
- Peptide Label: isoform X3
Ensembl Acc Id: ENSCSAP00000014763   ⟸   ENSCSAT00000001312
RefSeq Acc Id: XP_037861229   ⟸   XM_038005301
- Peptide Label: isoform X2
RefSeq Acc Id: XP_037861228   ⟸   XM_038005300
- Peptide Label: isoform X2
RefSeq Acc Id: XP_037861230   ⟸   XM_038005302
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000003283 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000001312.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.90 UniProtKB/TrEMBL
InterPro Centrosomal_MT-associated UniProtKB/TrEMBL
  Cep57_CLD UniProtKB/TrEMBL
  Cep57_MT-bd_dom UniProtKB/TrEMBL
KEGG Report csab:103248279 UniProtKB/TrEMBL
NCBI Gene CEP57 ENTREZGENE
PANTHER PTHR19336:SF11 UniProtKB/TrEMBL
  UNCHARACTERIZED DUF1167 UniProtKB/TrEMBL
Pfam Cep57_CLD UniProtKB/TrEMBL
  Cep57_MT_bd UniProtKB/TrEMBL
UniProt A0A0D9S1M4 ENTREZGENE, UniProtKB/TrEMBL