ZNF276 (zinc finger protein 276) - Rat Genome Database

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Gene: ZNF276 (zinc finger protein 276) Chlorocebus sabaeus
Analyze
Symbol: ZNF276
Name: zinc finger protein 276
RGD ID: 18500688
Description: ENCODES a protein that exhibits metal ion binding (inferred); sequence-specific double-stranded DNA binding (inferred); zinc ion binding (inferred); ASSOCIATED WITH autosomal recessive chronic granulomatous disease 4 (ortholog); Fanconi anemia (ortholog); Fanconi anemia complementation group A (ortholog); FOUND IN kinetochore (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1575,057,541 - 75,073,328 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl575,057,253 - 75,073,023 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666047422,156 - 438,074 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
kinetochore  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ZNF276
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1575,057,541 - 75,073,328 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl575,057,253 - 75,073,023 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666047422,156 - 438,074 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ZNF276
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381689,720,368 - 89,740,925 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1689,720,400 - 89,740,925 (+)EnsemblGRCh38hg38GRCh38
GRCh371689,786,776 - 89,807,333 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361688,314,934 - 88,333,811 (+)NCBINCBI36Build 36hg18NCBI36
Build 341688,314,933 - 88,333,811NCBI
Celera1674,851,642 - 74,871,575 (+)NCBICelera
Cytogenetic Map16q24.3NCBI
HuRef1675,482,473 - 75,502,544 (+)NCBIHuRef
CHM1_11691,198,621 - 91,218,535 (+)NCBICHM1_1
T2T-CHM13v2.01695,805,134 - 95,825,676 (+)NCBIT2T-CHM13v2.0
Zfp276
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398123,980,934 - 123,997,290 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8123,980,934 - 123,996,484 (+)EnsemblGRCm39 Ensembl
GRCm388123,254,195 - 123,270,551 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8123,254,195 - 123,269,745 (+)EnsemblGRCm38mm10GRCm38
MGSCv378125,778,095 - 125,794,451 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368126,142,032 - 126,155,826 (+)NCBIMGSCv36mm8
Celera8127,493,764 - 127,509,992 (+)NCBICelera
Cytogenetic Map8E1NCBI
cM Map872.09NCBI
Zfp276
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81968,199,709 - 68,212,757 (+)NCBIGRCr8
mRatBN7.21951,291,005 - 51,304,240 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1951,290,777 - 51,304,049 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01956,054,250 - 56,067,767 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1956,054,212 - 56,067,581 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01966,759,118 - 66,772,638 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41953,575,020 - 53,588,068 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11953,580,061 - 53,592,948 (+)NCBI
Celera1950,526,582 - 50,540,099 (+)NCBICelera
Cytogenetic Map19q12NCBI
Znf276
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555413,259,479 - 3,272,666 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555413,259,945 - 3,272,990 (+)NCBIChiLan1.0ChiLan1.0
ZNF276
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21899,566,702 - 99,585,445 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan116105,456,293 - 105,474,201 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01670,478,127 - 70,498,672 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11690,147,294 - 90,165,192 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1690,147,474 - 90,165,192 (+)Ensemblpanpan1.1panPan2
ZNF276
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1563,838,818 - 63,857,742 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl563,838,987 - 63,857,924 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha563,849,208 - 63,870,613 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0564,063,920 - 64,085,545 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl564,066,428 - 64,085,665 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1564,084,241 - 64,105,646 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0563,921,878 - 63,943,253 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0564,328,375 - 64,349,807 (-)NCBIUU_Cfam_GSD_1.0
Znf276
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934924,566,258 - 24,580,243 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936641320,143 - 332,424 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936641305,423 - 332,312 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF276
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6298,039 - 313,403 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16298,034 - 316,451 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26425,664 - 442,983 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Znf276
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624746252,631 - 266,680 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624746252,631 - 266,789 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000000806   ⟹   ENSCSAP00000015259
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl575,057,253 - 75,073,023 (+)Ensembl
RefSeq Acc Id: XM_007994429   ⟹   XP_007992620
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1575,057,821 - 75,073,328 (+)NCBI
Vero_WHO_p1.0NW_023666047422,156 - 437,760 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007994430   ⟹   XP_007992621
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1575,057,541 - 75,073,328 (+)NCBI
Vero_WHO_p1.0NW_023666047422,156 - 438,074 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007992620 (Get FASTA)   NCBI Sequence Viewer  
  XP_007992621 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000015259
  ENSCSAP00000015259.1
RefSeq Acc Id: XP_007992621   ⟸   XM_007994430
- Peptide Label: isoform X2
- UniProtKB: A0A0D9S320 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007992620   ⟸   XM_007994429
- Peptide Label: isoform X1
Ensembl Acc Id: ENSCSAP00000015259   ⟸   ENSCSAT00000000806


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000002787 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000000806.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf_AD UniProtKB/TrEMBL
  ZnF_C2H2-type_TF UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene ZNF276 ENTREZGENE
PANTHER TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 276 UniProtKB/TrEMBL
Pfam zf-AD UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PROSITE ZAD UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A0D9S320 ENTREZGENE, UniProtKB/TrEMBL