Zfp276 (zinc finger protein (C2H2 type) 276)

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Gene: Zfp276 (zinc finger protein (C2H2 type) 276) Rattus norvegicus

Analyze

Symbol:

Zfp276

Name:

zinc finger protein (C2H2 type) 276

RGD ID:

1307469

Description:

Predicted to have DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to localize to kinetochore and nuclear chromatin. Orthologous to human ZNF276 (zinc finger protein 276); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

MODEL

Also known as:

LOC307924; zinc finger protein 276

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZNF276 (zinc finger protein 276)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Zfp276 (zinc finger protein (C2H2 type) 276)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Znf276 (zinc finger protein 276)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZNF276 (zinc finger protein 276)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZNF276 (zinc finger protein 276)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Znf276 (zinc finger protein 276)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZNF276 (zinc finger protein 276)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	ZNF276 (zinc finger protein 276)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Znf276 (zinc finger protein 276)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ZNF276 (zinc finger protein 276)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|TreeFam)
Mus musculus (house mouse):	Zfp276 (zinc finger protein (C2H2 type) 276)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|TreeFam)
Caenorhabditis elegans (roundworm):	lsy-2	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Caenorhabditis elegans (roundworm):	F26A10.2	Alliance	DIOPT (Ensembl Compara\|PANTHER)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	19	51,291,005 - 51,304,240 (+)	NCBI
Rnor_6.0 Ensembl	19	56,054,212 - 56,067,581 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	19	56,054,250 - 56,067,767 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	19	66,759,118 - 66,772,638 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	53,575,020 - 53,588,068 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	19	53,580,061 - 53,592,948 (+)	NCBI
Celera	19	50,526,582 - 50,540,099 (+)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Fanconi anemia (ISO)

Fanconi anemia complementation group A (ISO)

microcephaly (ISO)

neuroblastoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

amphetamine (EXP)

arsane (ISO)

arsenic atom (ISO)

bisphenol A (EXP)

caffeine (EXP)

carbon nanotube (ISO)

clofibrate (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

folic acid (ISO)

lead(0) (ISO)

lead(2+) (ISO)

methoxyacetic acid (EXP)

methylmercury chloride (EXP)

Monobutylphthalate (EXP)

paracetamol (ISO)

pirinixic acid (ISO)

sunitinib (ISO)

Testosterone propionate (ISO)

tetrachloromethane (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

chromatin (IBA)

kinetochore (ISO)

nucleus (IEA)

Molecular Function

DNA-binding transcription factor activity (IBA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA)

sequence-specific double-stranded DNA binding (ISO)

zinc ion binding (IEA)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	RGD automated data pipeline
3.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:20813266

Genomics

Comparative Map Data

Zfp276
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	19	51,291,005 - 51,304,240 (+)	NCBI
Rnor_6.0 Ensembl	19	56,054,212 - 56,067,581 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	19	56,054,250 - 56,067,767 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	19	66,759,118 - 66,772,638 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	53,575,020 - 53,588,068 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	19	53,580,061 - 53,592,948 (+)	NCBI
Celera	19	50,526,582 - 50,540,099 (+)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

ZNF276
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	16	89,720,400 - 89,740,925 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	16	89,720,368 - 89,740,925 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	16	89,786,393 - 89,807,333 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
GRCh37	16	89,786,776 - 89,807,333 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	88,314,934 - 88,333,811 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	16	88,314,933 - 88,333,811	NCBI
Celera	16	74,851,642 - 74,871,575 (+)	NCBI
Cytogenetic Map	16	q24.3	NCBI
HuRef	16	75,482,473 - 75,502,544 (+)	NCBI		HuRef
CHM1_1	16	91,198,004 - 91,218,535 (+)	NCBI		CHM1_1

Zfp276
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	123,980,934 - 123,997,290 (+)	NCBI	GRCm39		mm39
GRCm38	8	123,254,195 - 123,270,551 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	123,254,195 - 123,269,745 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	125,778,095 - 125,794,451 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	126,142,032 - 126,155,826 (+)	NCBI			mm8
Celera	8	127,493,764 - 127,509,992 (+)	NCBI		Celera
Cytogenetic Map	8	E1	NCBI
cM Map	8	72.09	NCBI

Znf276
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955541	3,259,479 - 3,272,666 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955541	3,259,945 - 3,272,990 (+)	NCBI	ChiLan1.0	ChiLan1.0

ZNF276
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	16	90,147,294 - 90,165,192 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	90,147,474 - 90,165,192 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	16	70,478,127 - 70,498,672 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

ZNF276
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	5	63,838,987 - 63,857,924 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	5	63,838,818 - 63,857,742 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Znf276
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936641	305,423 - 332,312 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZNF276
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	298,036 - 313,366 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	298,034 - 316,451 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	425,664 - 442,983 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZNF276
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	75,057,541 - 75,073,328 (+)	NCBI
ChlSab1.1 Ensembl	5	75,057,253 - 75,073,023 (+)	Ensembl

Znf276
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624746	252,631 - 266,789 (-)	NCBI

Position Markers

D19Got120

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	19	56,053,689 - 56,053,789	NCBI	Rnor6.0
Rnor_5.0	19	66,758,561 - 66,758,661	UniSTS	Rnor5.0
RGSC_v3.4	19	53,573,990 - 53,574,090	UniSTS	RGSC3.4
Celera	19	50,526,021 - 50,526,121	UniSTS
Cytogenetic Map	19	q12	UniSTS

RH134128

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	19	56,065,637 - 56,065,842	NCBI	Rnor6.0
Rnor_5.0	19	66,770,509 - 66,770,714	UniSTS	Rnor5.0
RGSC_v3.4	19	53,585,938 - 53,586,143	UniSTS	RGSC3.4
Celera	19	50,537,969 - 50,538,174	UniSTS
RH 3.4 Map	19	710.21	UniSTS
Cytogenetic Map	19	q12	UniSTS

MARC_12315-12316:1005759661:1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	19	56,064,444 - 56,064,852	NCBI	Rnor6.0
Rnor_5.0	19	66,769,316 - 66,769,724	UniSTS	Rnor5.0
RGSC_v3.4	19	53,584,745 - 53,585,153	UniSTS	RGSC3.4
Celera	19	50,536,776 - 50,537,184	UniSTS
Cytogenetic Map	19	q12	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2432963	62275575	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	6506761	60220581	Rat
1578764	Stresp19	Stress response QTL 19	3.6	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	19	18993982	62275575	Rat
7411549	Bw130	Body weight QTL 130	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	19177495	62275575	Rat
2298478	Eau8	Experimental allergic uveoretinitis QTL 8		0.0163	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	19	21407787	62275575	Rat
61350	Bp32	Blood pressure QTL 32		0.012	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	19	24818257	62275575	Rat
724546	Kidm3	Kidney mass QTL 3	3.1		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	19	32994392	62275575	Rat
1358200	Insglur2	Insulin/glucose ratio QTL 2	4.1		blood glucose amount (VT:0000188)	serum insulin level (CMO:0000358)	19	37916799	60220451	Rat
1358200	Insglur2	Insulin/glucose ratio QTL 2	4.1		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	19	37916799	60220451	Rat
5135224	Leukc1	Leukocyte quantity QTL 1			eosinophil quantity (VT:0002602)	blood eosinophil count (CMO:0000033)	19	48830712	60220581	Rat
2313395	Anxrr26	Anxiety related response QTL 26			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	19	54735217	58072143	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	263
Count of miRNA genes:	173
Interacting mature miRNAs:	195
Transcripts:	ENSRNOT00000022324, ENSRNOT00000066034
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2	10	16	8	11	8			45	23	34	11
Low	1	33	41	33	8	33	8	11	29	12	7		8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_002728603	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005496931	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC115273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC079416	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000022324 ⟹ ENSRNOP00000022324

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	19	56,054,212 - 56,067,581 (+)	Ensembl

RefSeq Acc Id:

XM_002725424 ⟹ XP_002725470

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Celera	19	50,526,582 - 50,540,099 (+)	NCBI

Sequence:

show sequence

GATACACTTCCGCCGGCCCCGCCCCGCCGCGCAGAACTGGGTTTACCGATTAGAGGGGGTCAGG
TGGGTCTTGTCAGCTATTCTGTCGGACTTACTCTGAGTGTCGACGAGAAGACTGGTGGAAAGAA
CCTCACGTTTTGAGGTTTTCTAAGTGCCACAGCCCGTGCGTCAGTTCGAGGCAGTTTACCCTCC
CGGGTGCTCCTCCTTTATGGGCCAGTCGCAAGTTCTGAGCGACCCTAAGAACTCTGGGCTCTCG
ACACAGCAGTGGCTACTGTGGCTCCTGGGCCGCTCCCCACTTCGCTCCACCCCTCGTTCACCAG
GCTCAGATCTCGGGGAGCCGAGCGGAGCCGAACGGCGCGGCGGAGTGTAGCGGAACGGGACTGA
GTGAAGTTAAGTCCGCTCTAGCAGAACTCAGTGAGCCGAGCCACACGGAATAGCACGGAGCGGG
GATCAAGTGGCGGCTGCCGCCATGAAGCGGGACCGACTCGGCCGCTTCCTGTCTCCTGGAATAG
CTCGGCAGCGCGGGAGTTCGGGCAGCAGCTGTGGAAGCGGTCGGACTCGGGGTCGCCCTTCTCG
CACCGGCGGATCGAGCGCTGACGGGGCGGCTCCTCAACTCAGCTGGGGCTCGACGCGCTCCTGC
GGGGACACGGGCGAGGACGGCACAGACGAGGCAGGAGCAGGCCGGACTCTCACCATGGGGCACT
GTCGTCTCTGCCATGGGAAGTTTTCCTCACGGAGCCTCCGAAGCATCTCTGAGAGAGTGCCTGG
GGAGACCTCAGAGAGATTGTCCCCAGGGGAGCGTGTCTTCATCAGGGACTTCCAGCGTCTGCTG
GGTGTTGCTGTGCACCAGGACCCAGCCCTGCCTCAGTTTGTCTGCAAGAACTGCTACACCCAAT
TCTATCAGTGCCACAGCCTTCTCAGGTCCTTCTTACAGAGAGTCAATGTCTCCCCAGCTGGCCA
GCGGAAACCTTGTACAAAGGTCGGTGTTCAGCCTCCCACAGTGGCAGAGGAGGGAGCATGTATG
GCTGATCTGATCACCTCGAGCCCTCAGTGTCTGCACGGCTTGGTGGGCTGGGTGCATGAGCATG
CAGTCAACTGTGGGTGTCTGCCCAGCCTTCAGAGGACACTGTCCTCTGAGTACTGCGGCGTCAT
CCAGGCTGTGTGGGGCTGCGACCAGGGCCATGACTTCACCATGGACACAGACTCCGGCTGCAGA
GCTCTCCTTTTGGACAGTGCATTAGCAGTGAAATGGGGAAAGGAACTAGCACCACGGCTGGCCC
AGAGCTCAGCGTCAGACCCCACTGGAGCTGCCTCTCAGCTCTGCCAGGCCAGAGAAACTCAAGT
TGGATCTGAGACCAAGACATTGCCCAGTGTGGATGTGGCCCTGCTGCACTCACATGGAGACTCT
GTGGGACCTGGGCTAAGCCCCTATATACAGCCAAACTTGGCTCCCAGTGAGGCCCCAGGGCAAC
TGGGTGAGAAGCAGGTTCCATCTTCAACCTCGGATGATCGGGTAAAAGACGAGTTCAGTGACCT
TTCTGAGGGAGACGTCCTGAGTGAAGATGACAGTGATAAGAAGCAAACCCCACAGTCCTCGGAT
GAGTCCTTTGAGCCTTACCCAGAAAAGAAGGTCTCTGGTAAGAAGAGTGAAGGCAAAGAAGCCA
AGAGGCCTGAAGAGCCCAAAATCAGAAAGAAGCCAGGCCCCAAGCCTGGATGGAAGAAAAAGCT
CCGCTGTGAGAGGGAGGAGCTGCCCACCATCTACAAGTGTCCTTACCAGGGCTGCACAGCTGTA
TACCGGGGGGCTGACGGCATGAAGAAGCACATTAAGGAGCACCATGAGGAGGTCCGGGAAAGGC
CCTGCCCACACCCTGGTTGCAACAAGGTATTCATGATCGACCGATACCTACAGCGACACGTGAA
GCTCATCCACACAGAGGTACGCAATTACATCTGTGACGAATGTGGGCAGACCTTCAAGCAGCGG
AAGCACCTTCTTGTCCACCAGATGCGCCACTCAGGAGCCAAGCCACTGCAGTGTGAGGTCTGTG
GGTTCCAGTGCAGGCAACGAGCGTCCCTCAAGTACCACATGACCAAACACAAAGCAGAGACTGA
GCTGGATTTCGCCTGTGACCAGTGCGGCCGGCGGTTTGAAAAAGCCCACAACCTCAACGTGCAT
ATGTCCATGGTCCATCCTCTGACCCAGACCCAAGCCCTGCCTTTGGAAGCAGAGCCACCACCTG
GGCCTCTGAGCCTCGCTGGGACCGTGGAGGGCCAGGCTGTGAAGCCCGAGCCGACCTGAGGACT
GACTGCAGGCGGACAGACCGCTGGACGTGGAGCAGCTGGAACGCAGCCGTGATGTGAGGTCAAG
GACAGTTCCACTCACGTTCCTCACTCCCCCCCTGGCACAGTTCTGCTTGCTTGTTGGATCCCGT
GCTACACCCACTCACAGAGCCAGCAGCCATATGGTGGAGGGCACCTCTCTCGGGCTGAGAGCGT
GTACTTCAACCCGCTGTGGTACCAGCAGTTTTATTTTCCTATGGACACCGAACAATAAGGCCAG
ACACAGATTATGAATAATTAATTTCTCTTTTCCTAACCAGAGCAGTCGAGGAGATTTGTAATCC
ACTTTCTAGTGTAACAAGAACTCCATGTTATGCTTGCAATAAATTATTCACAAAGGTG

hide sequence

RefSeq Acc Id:

XM_002728603 ⟹ XP_002728649

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	51,291,005 - 51,304,240 (+)	NCBI
Rnor_6.0	19	56,054,250 - 56,067,767 (+)	NCBI
Rnor_5.0	19	66,759,118 - 66,772,638 (+)	NCBI
RGSC_v3.4	19	53,575,020 - 53,588,068 (+)	RGD

Sequence:

show sequence

GATACACTTCCGCCGGCCCCGCCCCGCCGCGCAGAACTGGGTTTACCGATTAGAGGGGGTCAGG
TGGGTCTTGTCAGCTATTCTGTCGGACTTACTCTGAGTGTCGACGAGAAGACTGGTGGAAAGAA
CCTCACGTTTTGAGGTTTTCTAAGTGCCACAGCCCGTGCGTCAGTTCGAGGCAGTTTACCCTCC
CGGGTGCTCCTCCTTTATGGGCCAGTCGCAAGTTCTGAGCGACCCTAAGAACTCTGGGCTCTCG
ACACAGCAGTGGCTACTGTGGCTCCTGGGCCGCTCCCCACTTCGCTCCACCCCTCGTTCACCAG
GCTCAGATCTCGGGGAGCCGAGCGGAGCCGAACGGCGCGGCGGAGTGTAGCGGAACGGGACTGA
GTGAAGTTAAGTCCGCTCTAGCAGAACTCAGTGAGCCGAGCCACACGGAATAGCACGGAGCGGG
GATCAAGTGGCGGCTGCCGCCATGAAGCGGGACCGACTCGGCCGCTTCCTGTCTCCTGGAATAG
CTCGGCAGCGCGGGAGTTCGGGCAGCAGCTGTGGAAGCGGTCGGACTCGGGGTCGCCCTTCTCG
CACCGGCGGATCGAGCGCTGACGGGGCGGCTCCTCAACTCAGCTGGGGCTCGACGCGCTCCTGC
GGGGACACGGGCGAGGACGGCACAGACGAGGCAGGAGCAGGCCGGACTCTCACCATGGGGCACT
GTCGTCTCTGCCATGGGAAGTTTTCCTCACGGAGCCTCCGAAGCATCTCTGAGAGAGTGCCTGG
GGAGACCTCAGAGAGATTGTCCCCAGGGGAGCGTGTCTTCATCAGGGACTTCCAGCGTCTGCTG
GGTGTTGCTGTGCACCAGGACCCAGCCCTGCCTCAGTTTGTCTGCAAGAACTGCTACACCCAAT
TCTATCAGTGCCACAGCCTTCTCAGGTCCTTCTTACAGAGAGTCAATGTCTCCCCAGCTGGCCA
GCGGAAACCTTGTACAAAGGTCGGTGTTCAGCCTCCCACAGTGGCAGAGGAGGGAGCATGTATG
GCTGATCTGATCACCTCGAGCCCTCAGTGTCTGCACGGCTTGGTGGGCTGGGTGCATGAGCATG
CAGTCAACTGTGGGTGTCTGCCCAGCCTTCAGAGGACACTGTCCTCTGAGTACTGCGGCGTCAT
CCAGGCTGTGTGGGGCTGCGACCAGGGCCATGACTTCACCATGGACACAGACTCCGGCTGCAGA
GCTCTCCTTTTGGACAGTGCATTAGCAGTGAAATGGGGAAAGGAACTAGCACCACGGCTGGCCC
AGAGCTCAGCGTCAGACCCCACTGGAGCTGCCTCTCAGCTCTGCCAGGCCAGAGAAACTCAAGT
TGGATCTGAGACCAAGACATTGCCCAGTGTGGATGTGGCCCTGCTGCACTCACATGGAGACTCT
GTGGGACCTGGGCTAAGCCCCTATATACAGCCAAACTTGGCTCCCAGTGAGGCCCCAGGGCAAC
TGGGTGAGAAGCAGGTTCCATCTTCAACCTCGGATGATCGGGTAAAAGACGAGTTCAGTGACCT
TTCTGAGGGAGACGTCCTGAGTGAAGATGACAGTGATAAGAAGCAAACCCCACAGTCCTCGGAT
GAGTCCTTTGAGCCTTACCCAGAAAAGAAGGTCTCTGGTAAGAAGAGTGAAGGCAAAGAAGCCA
AGAGGCCTGAAGAGCCCAAAATCAGAAAGAAGCCAGGCCCCAAGCCTGGATGGAAGAAAAAGCT
CCGCTGTGAGAGGGAGGAGCTGCCCACCATCTACAAGTGTCCTTACCAGGGCTGCACAGCTGTA
TACCGGGGGGCTGACGGCATGAAGAAGCACATTAAGGAGCACCATGAGGAGGTCCGGGAAAGGC
CCTGCCCACACCCTGGTTGCAACAAGGTATTCATGATCGACCGATACCTACAGCGACACGTGAA
GCTCATCCACACAGAGGTACGCAATTACATCTGTGACGAATGTGGGCAGACCTTCAAGCAGCGG
AAGCACCTTCTTGTCCACCAGATGCGCCACTCAGGAGCCAAGCCACTGCAGTGTGAGGTCTGTG
GGTTCCAGTGCAGGCAACGAGCGTCCCTCAAGTACCACATGACCAAACACAAAGCAGAGACTGA
GCTGGATTTCGCCTGTGACCAGTGCGGCCGGCGGTTTGAAAAAGCCCACAACCTCAACGTGCAT
ATGTCCATGGTCCATCCTCTGACCCAGACCCAAGCCCTGCCTTTGGAAGCAGAGCCACCACCTG
GGCCTCTGAGCCTCGCTGGGACCGTGGAGGGCCAGGCTGTGAAGCCCGAGCCGACCTGAGGACT
GACTGCAGGCGGACAGACCGCTGGACGTGGAGCAGCTGGAACGCAGCCGTGATGTGAGGTCAAG
GACAGTTCCACTCACGTTCCTCACTCCCCCCCTGGCACAGTTCTGCTTGCTTGTTGGATCCCGT
GCTACACCCACTCACAGAGCCAGCAGCCATATGGTGGAGGGCACCTCTCTCGGGCTGAGAGCGT
GTACTTCAACCCGCTGTGGTACCAGCAGTTTTATTTTCCTATGGACACCGAACAATAAGGCCAG
ACACAGATTATGAATAATTAATTTCTCTTTTCCTAACCAGAGCAGTCGAGGAGATTTGTAATCC
ACTTTCTAGTGTAACAAGAACTCCATGTTATGCTTGCAATAAATTATTCACAAAGGTG

hide sequence

RefSeq Acc Id:

XR_005496931

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	51,291,005 - 51,300,847 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_002728649	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH79416	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

XP_002725470 ⟸ XM_002725424

- Sequence:

show sequence

MKRDRLGRFLSPGIARQRGSSGSSCGSGRTRGRPSRTGGSSADGAAPQLSWGSTRSCGDTGEDG
TDEAGAGRTLTMGHCRLCHGKFSSRSLRSISERVPGETSERLSPGERVFIRDFQRLLGVAVHQD
PALPQFVCKNCYTQFYQCHSLLRSFLQRVNVSPAGQRKPCTKVGVQPPTVAEEGACMADLITSS
PQCLHGLVGWVHEHAVNCGCLPSLQRTLSSEYCGVIQAVWGCDQGHDFTMDTDSGCRALLLDSA
LAVKWGKELAPRLAQSSASDPTGAASQLCQARETQVGSETKTLPSVDVALLHSHGDSVGPGLSP
YIQPNLAPSEAPGQLGEKQVPSSTSDDRVKDEFSDLSEGDVLSEDDSDKKQTPQSSDESFEPYP
EKKVSGKKSEGKEAKRPEEPKIRKKPGPKPGWKKKLRCEREELPTIYKCPYQGCTAVYRGADGM
KKHIKEHHEEVRERPCPHPGCNKVFMIDRYLQRHVKLIHTEVRNYICDECGQTFKQRKHLLVHQ
MRHSGAKPLQCEVCGFQCRQRASLKYHMTKHKAETELDFACDQCGRRFEKAHNLNVHMSMVHPL
TQTQALPLEAEPPPGPLSLAGTVEGQAVKPEPT

hide sequence

RefSeq Acc Id:

XP_002728649 ⟸ XM_002728603

- UniProtKB:

F1LN08 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MKRDRLGRFLSPGIARQRGSSGSSCGSGRTRGRPSRTGGSSADGAAPQLSWGSTRSCGDTGEDG
TDEAGAGRTLTMGHCRLCHGKFSSRSLRSISERVPGETSERLSPGERVFIRDFQRLLGVAVHQD
PALPQFVCKNCYTQFYQCHSLLRSFLQRVNVSPAGQRKPCTKVGVQPPTVAEEGACMADLITSS
PQCLHGLVGWVHEHAVNCGCLPSLQRTLSSEYCGVIQAVWGCDQGHDFTMDTDSGCRALLLDSA
LAVKWGKELAPRLAQSSASDPTGAASQLCQARETQVGSETKTLPSVDVALLHSHGDSVGPGLSP
YIQPNLAPSEAPGQLGEKQVPSSTSDDRVKDEFSDLSEGDVLSEDDSDKKQTPQSSDESFEPYP
EKKVSGKKSEGKEAKRPEEPKIRKKPGPKPGWKKKLRCEREELPTIYKCPYQGCTAVYRGADGM
KKHIKEHHEEVRERPCPHPGCNKVFMIDRYLQRHVKLIHTEVRNYICDECGQTFKQRKHLLVHQ
MRHSGAKPLQCEVCGFQCRQRASLKYHMTKHKAETELDFACDQCGRRFEKAHNLNVHMSMVHPL
TQTQALPLEAEPPPGPLSLAGTVEGQAVKPEPT

hide sequence

RefSeq Acc Id:

ENSRNOP00000022324 ⟸ ENSRNOT00000022324

Protein Domains

C2H2-type

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701228

Promoter ID:

EPDNEW_R11748

Type:

initiation region

Name:

Zfp276_1

Description:

zinc finger protein 276

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	19	56,054,253 - 56,054,313	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Damaging Variants

Assembly: Rnor_5.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
19	66761553	66761554	A	G	snv	DOB/Oda (KyushuU), GK/Ox (KNAW)

Assembly: Rnor_6.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
19	56056681	56056682	A	G	snv	GK/Ox (RGD)

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307469	AgrOrtholog
Ensembl Genes	ENSRNOG00000016631	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000022324	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000022324	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7113470	IMAGE-MGC_LOAD
InterPro	Znf_AD	UniProtKB/TrEMBL
	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
KEGG Report	rno:307924	UniProtKB/TrEMBL
MGC_CLONE	MGC:94957	IMAGE-MGC_LOAD
NCBI Gene	307924	ENTREZGENE
Pfam	zf-AD	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
PhenoGen	Zfp276	PhenoGen
PROSITE	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
SMART	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57667	UniProtKB/TrEMBL
UniProt	F1LN08	ENTREZGENE, UniProtKB/TrEMBL
	Q6AXP9_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-12-06	Zfp276	zinc finger protein (C2H2 type) 276	Zfp276_predicted	zinc finger protein (C2H2 type) 276 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Zfp276_predicted	zinc finger protein (C2H2 type) 276 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar