CFAP20 (cilia and flagella associated protein 20)

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Gene: CFAP20 (cilia and flagella associated protein 20) Chlorocebus sabaeus

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Symbol:

CFAP20

Name:

cilia and flagella associated protein 20

RGD ID:

18491340

Description:

INVOLVED IN protein polyglutamylation (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Chemical and Drug Induced Liver Injury (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); FOUND IN axonemal B tubule inner sheath (ortholog); sperm flagellum (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

cilia- and flagella-associated protein 20; UPF0468 protein C16orf80 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	44,047,860 - 44,063,605 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	44,047,464 - 44,063,738 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666047	32,114,936 - 32,130,731 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Bardet-Biedl syndrome (ISO)

Chemical and Drug Induced Liver Injury (ISO)

Chromosome 16q12 Duplication Syndrome (ISO)

cone-rod dystrophy (ISO)

developmental and epileptic encephalopathy (ISO)

early infantile epileptic encephalopathy (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cilium assembly (IEA)

flagellated sperm motility (IEA)

positive regulation of cell motility (IEA)

positive regulation of feeding behavior (IEA)

protein polyglutamylation (ISO)

regulation of cilium beat frequency involved in ciliary motility (IEA)

Cellular Component

axonemal B tubule inner sheath (IEA,ISO)

axonemal microtubule (IEA)

centriole (IEA)

ciliary basal body (IEA)

cilium (IEA)

cytoplasm (IEA)

cytoskeleton (IEA)

microtubule (IEA)

nucleoplasm (IEA)

sperm flagellum (IEA,ISO)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

CFAP20
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	44,047,860 - 44,063,605 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	44,047,464 - 44,063,738 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666047	32,114,936 - 32,130,731 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CFAP20
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	58,113,592 - 58,129,381 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	58,113,592 - 58,129,381 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	58,147,496 - 58,163,285 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	56,704,997 - 56,720,797 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	16	42,644,770 - 42,662,761 (-)	NCBI		Celera
Cytogenetic Map	16	q21	NCBI
HuRef	16	44,014,719 - 44,031,168 (-)	NCBI		HuRef
CHM1_1	16	59,554,542 - 59,570,329 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	16	63,908,917 - 63,925,035 (-)	NCBI		T2T-CHM13v2.0

Cfap20
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	96,146,867 - 96,161,716 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	96,146,877 - 96,161,497 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	95,420,249 - 95,434,869 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	95,420,249 - 95,434,869 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	97,944,149 - 97,958,769 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	98,309,381 - 98,323,921 (-)	NCBI		MGSCv36	mm8
Celera	8	99,735,109 - 99,749,735 (-)	NCBI		Celera
Cytogenetic Map	8	C5	NCBI
cM Map	8	47.12	NCBI

Cfap20
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	9,614,265 - 9,628,612 (+)	NCBI		GRCr8
mRatBN7.2	19	9,608,867 - 9,622,558 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	9,608,859 - 9,622,558 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	9,573,964 - 9,587,384 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	10,340,790 - 10,354,212 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	9,627,120 - 9,640,542 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	10,024,938 - 10,038,838 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	10,024,947 - 10,038,784 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	10,009,188 - 10,022,985 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	10,067,502 - 10,081,452 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	19	10,072,290 - 10,086,278 (+)	NCBI
Celera	19	9,500,482 - 9,514,062 (+)	NCBI		Celera
Cytogenetic Map	19	p13	NCBI

Cfap20
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955433	15,648,099 - 15,663,502 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955433	15,648,529 - 15,663,308 (-)	NCBI	ChiLan1.0	ChiLan1.0

CFAP20
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	67,587,278 - 67,602,717 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	73,508,168 - 73,523,603 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	38,392,912 - 38,408,320 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	57,524,195 - 57,539,638 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	57,524,195 - 57,539,638 (-)	Ensembl	panpan1.1		panPan2

CFAP20
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	58,445,932 - 58,459,437 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	58,445,927 - 58,459,779 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	55,075,887 - 55,089,744 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	58,984,422 - 58,998,257 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	58,984,403 - 58,998,253 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	55,815,965 - 55,829,801 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	56,823,530 - 56,837,397 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	57,716,352 - 57,730,234 (+)	NCBI		UU_Cfam_GSD_1.0

Cfap20
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	49,565,422 - 49,577,404 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936475	10,011,616 - 10,023,756 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936475	10,011,671 - 10,023,643 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CFAP20
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	19,954,925 - 19,969,347 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	19,954,698 - 19,969,383 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	17,978,593 - 17,993,262 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Cfap20
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624746	28,071,519 - 28,085,231 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624746	28,071,502 - 28,085,040 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
76	36	20	36	36	60	20

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007993496	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000002807 ⟹ ENSCSAP00000001102

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	5	44,047,464 - 44,063,738 (-)	Ensembl

RefSeq Acc Id:

XM_007993496 ⟹ XP_007991687

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	5	44,047,860 - 44,063,605 (-)	NCBI
Vero_WHO_p1.0	NW_023666047	32,114,936 - 32,130,731 (+)	NCBI

Sequence:

show sequence

GCCCTCCGCCTCCATTGAAGGCGGGGAAATACCGCGGCGCTGGCGGTAGTTGCTGTGGTTTCCG
TTCTGAGCTCGCAGCTTAGGAGCTGAAGATCGCGGACTTAGCGTTCCCGCGTCCGAGTCCGGCC
ATCAGTGACTGCAGATCCGGAGGCCGGGAGCTCAACCACCCTTCTTCGGAACAGGGCCGGCCTG
CTGCTGTGCCTTCGCTGCTCGGTGCCTGTATCTACTCCTGGGCCTAGCTCGGCTCCGGGGCGGC
TTAGGAGAAGGCCGCCGGCGAGATGTTCAAAAATACGTTCCAGAGCGGCTTCCTCTCCATCCTC
TACAGCATCGGCAGCAAGCCCCTGCAAATCTGGGACAAAAAGGTACGGAATGGCCACATCAAAA
GAATCACTGATAATGACATCCAGTCCCTGGTGCTAGAGATTGAAGGGACAAATGTAAGCACCAC
ATATATCACATGCCCTGCAGACCCCAAGAAGACACTGGGAATTAAACTTCCTTTCCTCGTCATG
ATTATCAAAAACCTGAAGAAGTATTTTACCTTCGAAGTACAGGTACTAGATGACAAGAATGTGC
GTCGTCGCTTTCGGGCAAGTAACTACCAGAGCACCACCCGGGTCAAACCCTTCATCTGCACCAT
GCCCATGCGGCTGGATGACGGCTGGAACCAGATTCAGTTCAACTTACTAGACTTCACGCGGCGA
GCGTATGGCACCAATTACATTGAGACCCTCAGAGTGCAGATCCATGCAAACTGTCGCATCCGAC
GGGTTTACTTCTCAGACAGACTCTACTCAGAAGATGAGCTGCCGGCAGAGTTCAAACTGTATCT
CCCAGTTCAGAACAAGGCAAAGCAATAACTGGAATTGTGACTCAAGGGATAGACCCTGGATGTG
ACTCTTCTTTTAAAGAGGAAACTATGTGGAGGATGATGCAAAAACATATTTATCTTAGTTCACT
CTGCTGTAGTTCTGTTATTTATACTTGGTGTTGCTTGTCATGGACACCGGTGAACATGCCGTAA
CTCTGTAACTGCATTGTAAGTGCAGTGGGGGTAAGGAGTCCTGTGAGTGGCGCGTGAACTCTGG
AGCTTATTCCGCCGCCTGTCCCAGTGTTGGGGCAGATACCTTTTCCATGAACTTACAGAATTCA
AGATGGCCCTTAAGGAATTCCAGACCAATATTTCTTCCTGCAGTTTATTCTGTGTTTTATATAT
TATCTAAATATTTGTATATGCTGTGTAATACTCATAATCTGGAAATGAATAAAATGATATATTC
CTGGTTTGTAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_007991687	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000001102
	ENSCSAP00000001102.1

RefSeq Acc Id:	XP_007991687 ⟸ XM_007993496
- UniProtKB:	A0A0D9QXL3 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCSAP00000001102 ⟸ ENSCSAT00000002807

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000004774	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000002807.1	UniProtKB/TrEMBL
InterPro	CFA20/C3orf67	UniProtKB/TrEMBL
	CFA20_dom	UniProtKB/TrEMBL
KEGG Report	csab:103233081	UniProtKB/TrEMBL
NCBI Gene	CFAP20	ENTREZGENE
PANTHER	CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 20	UniProtKB/TrEMBL
	PTHR12458	UniProtKB/TrEMBL
Pfam	DUF667	UniProtKB/TrEMBL
UniProt	A0A0D9QXL3	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

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