CCDC62 (coiled-coil domain containing 62) - Rat Genome Database

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Gene: CCDC62 (coiled-coil domain containing 62) Chlorocebus sabaeus
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Symbol: CCDC62
Name: coiled-coil domain containing 62
RGD ID: 18488741
Description: ENCODES a protein that exhibits nuclear estrogen receptor binding (inferred); obsolete nuclear receptor coactivator activity (inferred); INVOLVED IN blastocyst hatching (ortholog); ASSOCIATED WITH short chain acyl-CoA dehydrogenase deficiency (ortholog); spermatogenic failure 67 (ortholog); FOUND IN acrosomal vesicle (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: coiled-coil domain-containing protein 62
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111118,112,517 - 118,166,571 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11118,113,620 - 118,163,128 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037127,148,739 - 127,204,403 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
CCDC62
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111118,112,517 - 118,166,571 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11118,113,620 - 118,163,128 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037127,148,739 - 127,204,403 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CCDC62
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812122,774,572 - 122,827,528 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12122,774,526 - 122,827,528 (+)EnsemblGRCh38hg38GRCh38
GRCh3712123,259,119 - 123,312,075 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612121,825,026 - 121,877,884 (+)NCBINCBI36Build 36hg18NCBI36
Celera12122,851,887 - 122,906,208 (+)NCBICelera
Cytogenetic Map12q24.31NCBI
HuRef12120,219,085 - 120,272,349 (+)NCBIHuRef
CHM1_112123,227,341 - 123,280,310 (+)NCBICHM1_1
T2T-CHM13v2.012122,769,980 - 122,822,978 (+)NCBIT2T-CHM13v2.0
Ccdc62
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395124,068,683 - 124,107,958 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5124,065,481 - 124,107,958 (+)EnsemblGRCm39 Ensembl
GRCm385123,930,425 - 123,969,895 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5123,930,679 - 123,969,895 (+)EnsemblGRCm38mm10GRCm38
MGSCv375124,380,698 - 124,419,904 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365124,191,309 - 124,223,466 (+)NCBIMGSCv36mm8
Celera5121,003,361 - 121,042,410 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map563.28NCBI
Ccdc62
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81238,284,089 - 38,320,828 (-)NCBIGRCr8
mRatBN7.21232,623,170 - 32,659,912 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1232,623,170 - 32,660,017 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1233,801,806 - 33,838,628 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01234,413,152 - 34,449,980 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01233,465,044 - 33,501,864 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01238,057,532 - 38,093,916 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1238,057,556 - 38,093,050 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01239,928,529 - 39,964,309 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41233,747,227 - 33,783,930 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1234,310,766 - 34,347,433 (-)NCBICelera
Cytogenetic Map12q15NCBI
Ccdc62
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554825,912,200 - 5,948,461 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554825,911,233 - 5,948,178 (-)NCBIChiLan1.0ChiLan1.0
CCDC62
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210130,865,722 - 130,921,163 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112130,862,300 - 130,917,556 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012120,378,805 - 120,431,822 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112124,615,143 - 124,664,963 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12124,615,139 - 124,664,052 (+)Ensemblpanpan1.1panPan2
CCDC62
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1266,655,819 - 6,697,283 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl266,655,700 - 6,697,115 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha266,817,639 - 6,858,658 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0266,905,045 - 6,946,664 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl266,906,815 - 6,946,638 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1266,837,833 - 6,878,838 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0266,930,559 - 6,971,895 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0266,884,172 - 6,925,614 (-)NCBIUU_Cfam_GSD_1.0
Ccdc62
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118157,629,178 - 157,671,359 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365581,807,973 - 1,851,208 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC62
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1430,028,566 - 30,066,257 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11430,028,561 - 30,066,638 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21431,718,543 - 31,756,359 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Ccdc62
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474722,842,925 - 22,871,392 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474722,839,359 - 22,871,145 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000000106   ⟹   ENSCSAP00000015946
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl11118,113,620 - 118,163,128 (+)Ensembl
RefSeq Acc Id: XM_008005064   ⟹   XP_008003255
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.111118,112,517 - 118,166,571 (+)NCBI
Vero_WHO_p1.0NW_023666037127,148,739 - 127,204,403 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008003255 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000015946.1
RefSeq Acc Id: XP_008003255   ⟸   XM_008005064
- UniProtKB: A0A0D9S507 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000015946   ⟸   ENSCSAT00000000106


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000002091 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000000106.1 UniProtKB/TrEMBL
KEGG Report csab:103239315 UniProtKB/TrEMBL
NCBI Gene CCDC62 ENTREZGENE
UniProt A0A0D9S507 ENTREZGENE, UniProtKB/TrEMBL