Ccdc62 (coiled-coil domain containing 62) - Rat Genome Database

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Gene: Ccdc62 (coiled-coil domain containing 62) Mus musculus
Analyze
Symbol: Ccdc62
Name: coiled-coil domain containing 62
RGD ID: 1616590
MGI Page MGI
Description: Predicted to enable nuclear estrogen receptor binding activity and nuclear receptor coactivator activity. Involved in spermatid development. Acts upstream of or within blastocyst hatching. Located in acrosomal vesicle. Is expressed in early conceptus and secondary oocyte. Human ortholog(s) of this gene implicated in spermatogenic failure 67. Orthologous to human CCDC62 (coiled-coil domain containing 62).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI661708; coiled-coil domain-containing protein 62; expressed sequence AI661708; G1-485-3; Gm150; rep; repro29
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395124,068,683 - 124,107,958 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5124,065,481 - 124,107,958 (+)EnsemblGRCm39 Ensembl
GRCm385123,930,425 - 123,969,895 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5123,930,679 - 123,969,895 (+)EnsemblGRCm38mm10GRCm38
MGSCv375124,380,698 - 124,419,904 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365124,191,309 - 124,223,466 (+)NCBIMGSCv36mm8
Celera5121,003,361 - 121,042,410 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map563.28NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
acrosomal vesicle  (IDA,ISO)
nucleus  (IEA,ISO)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073   PMID:18799693   PMID:21267068   PMID:27869233   PMID:28339613  
PMID:33230847  


Genomics

Comparative Map Data
Ccdc62
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395124,068,683 - 124,107,958 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5124,065,481 - 124,107,958 (+)EnsemblGRCm39 Ensembl
GRCm385123,930,425 - 123,969,895 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5123,930,679 - 123,969,895 (+)EnsemblGRCm38mm10GRCm38
MGSCv375124,380,698 - 124,419,904 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365124,191,309 - 124,223,466 (+)NCBIMGSCv36mm8
Celera5121,003,361 - 121,042,410 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map563.28NCBI
CCDC62
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812122,774,572 - 122,827,528 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12122,774,526 - 122,827,528 (+)EnsemblGRCh38hg38GRCh38
GRCh3712123,259,119 - 123,312,075 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612121,825,026 - 121,877,884 (+)NCBINCBI36Build 36hg18NCBI36
Celera12122,851,887 - 122,906,208 (+)NCBICelera
Cytogenetic Map12q24.31NCBI
HuRef12120,219,085 - 120,272,349 (+)NCBIHuRef
CHM1_112123,227,341 - 123,280,310 (+)NCBICHM1_1
T2T-CHM13v2.012122,769,980 - 122,822,978 (+)NCBIT2T-CHM13v2.0
Ccdc62
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81238,284,089 - 38,320,828 (-)NCBIGRCr8
mRatBN7.21232,623,170 - 32,659,912 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1232,623,170 - 32,660,017 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1233,801,806 - 33,838,628 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01234,413,152 - 34,449,980 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01233,465,044 - 33,501,864 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01238,057,532 - 38,093,916 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1238,057,556 - 38,093,050 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01239,928,529 - 39,964,309 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41233,747,227 - 33,783,930 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1234,310,766 - 34,347,433 (-)NCBICelera
Cytogenetic Map12q15NCBI
Ccdc62
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554825,912,200 - 5,948,461 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554825,911,233 - 5,948,178 (-)NCBIChiLan1.0ChiLan1.0
CCDC62
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210130,865,722 - 130,921,163 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112130,862,300 - 130,917,556 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012120,378,805 - 120,431,822 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112124,615,143 - 124,664,963 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12124,615,139 - 124,664,052 (+)Ensemblpanpan1.1panPan2
CCDC62
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1266,655,819 - 6,697,283 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl266,655,700 - 6,697,115 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha266,817,639 - 6,858,658 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0266,905,045 - 6,946,664 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl266,906,815 - 6,946,638 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1266,837,833 - 6,878,838 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0266,930,559 - 6,971,895 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0266,884,172 - 6,925,614 (-)NCBIUU_Cfam_GSD_1.0
Ccdc62
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118157,629,178 - 157,671,359 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365581,807,973 - 1,851,208 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC62
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1430,028,566 - 30,066,257 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11430,028,561 - 30,066,638 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21431,718,543 - 31,756,359 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC62
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111118,112,517 - 118,166,571 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11118,113,620 - 118,163,128 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037127,148,739 - 127,204,403 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc62
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474722,842,925 - 22,871,392 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474722,839,359 - 22,871,145 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1217
Count of miRNA genes:603
Interacting mature miRNAs:728
Transcripts:ENSMUST00000094320, ENSMUST00000165148, ENSMUST00000166129, ENSMUST00000166983, ENSMUST00000169898, ENSMUST00000171881
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572857343139985755Mouse
10412191Bbaa24_mB.burgdorferi-associated arthritis 24 (mouse)Not determined5119945037141700466Mouse
1301457Cfsw2_mcystic fibrosis survival to weaning 2 (mouse)Not determined590561006124561151Mouse
1301974Chab7_mcholesterol absorption 7 (mouse)Not determined595233214129233330Mouse
11528552Scram1_mspinal cord resistance to astrocytoma modifier 1 (mouse)5121455402151758149Mouse
1300827Cora1_mcorrelation in cytokine production 1 (mouse)Not determined5115156883149157015Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574460661132528839Mouse
1357662Lprq4_mlipoprotein QTL 4 (mouse)Not determined5114021753129632606Mouse
14746986Manh58_mmandible shape 58 (mouse)5102446283136446283Mouse
4142064Tmc1m4_mTmc1 modifier 4 (mouse)Not determined554500177127001072Mouse
10412239Alpq7_malcohol preference QTL 7 (mouse)Not determined5104705939138705939Mouse
1300993Hycdc_mhypercapnic duty cycle (mouse)Not determined590561006124561151Mouse
9587780Afw16_mabdominal fat weight QTL 16 (mouse)Not determined592830166126830285Mouse
1357644Egrd1_mearly growth rate, direct effect 1 (mouse)Not determined595434580129434786Mouse
12859290Criq2_mCitrobacter rodentium infection QTL 2 (mouse)5101332579135332579Mouse
1300940Actd3_mactivity-distance traveled 3 (mouse)Not determined596320385130320533Mouse
1300659Pcd8ts1_mp-glycoprotein positive CD8 T cell subset 1 (mouse)Not determined597021753131021986Mouse
1301362Prnr1_mprion resistance 1 (mouse)Not determined589418876146787935Mouse
1558774Lith17_mlithogenic gene 17 (mouse)Not determined595465549129465722Mouse
1300913Bwefm_mbody weight females and males day 10 (mouse)Not determined5109439348143439459Mouse
4141081Nidd7k_mNidd7 on KK-A (mouse)Not determined119945037149347326Mouse
10402486Dipa1_mdrug induced psychomotor activation 1 (mouse)Not determined595465549129465722Mouse
1301624Aevm2_mautoimmune extremity vasculitis in MRL mice 2 (mouse)Not determined5101863832135864028Mouse
10043890Trigq4_mtriglyceride QTL 4 (mouse)Not determined5107906299141906412Mouse
4141139Hmtb4_mhemostasis and thrombosis rebleeding time 4 (mouse)Not determined108762509126882944Mouse
11532736Sluc33b_msusceptibility to lung cancer 33b (mouse)5102945037136945196Mouse
4141519Hmtb5_mhemostasis and thrombosis bleeding time 5 (mouse)Not determined99949422126882944Mouse
26884395Humsd2_mhumerus midshaft diameter 2, 10 week (mouse)570057343132528839Mouse
1301858Smdq1_msegregation of mitochondrial DNA QTL 1 (mouse)Not determined597021753131021986Mouse
1301986Bpq4_mblood pressure QTL 4 (mouse)Not determined5121555236151758149Mouse
11049562Lmr24f_mleishmaniasis resistance 24f (mouse)590320962124321041Mouse
1301857Bglq14_mbody growth late QTL 14 (mouse)Not determined5118948964151758149Mouse
10412202Bbaa26_mB.burgdorferi-associated arthritis 26 (mouse)Not determined5104583688138555455Mouse
1301543Hypch_mhypercholesterolemia (mouse)Not determined5109238624139118905Mouse
12904945Tammq2_mtibialis anterior muscle mass QTL 2 (mouse)5100665965134665965Mouse
4142473Chlq11_mcirculating hormone level QTL 11 (mouse)Not determined5107906299141906412Mouse
13464251Ahl21_mage related hearing loss, early onset 21 (mouse)5109167240143167381Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
13464244Ahl19_mage related hearing loss, early onset 19 (mouse)595465549129465722Mouse
1301226Bbaa2_mB.burgdorferi-associated arthritis 2 (mouse)Not determined5115156883149157015Mouse
1300968Skts4_mskin tumor susceptibility 4 (mouse)Not determined589418876124238239Mouse
12904959Smmq1_msoleus muscle mass QTL 1 (mouse)5100665965134665965Mouse
10412197Bbaa25_mB.burgdorferi-associated arthritis 25 (mouse)Not determined5109167240143167381Mouse
1301102Cia14_mcollagen induced arthritis 14 (mouse)Not determined5113320385138555455Mouse
13506928Recrq8_mrecombination rate in male meiosis QTL 8 (mouse)574460661132528839Mouse
13464243Ahl20_mage related hearing loss, early onset 20 (mouse)5107906299141906412Mouse

Markers in Region
AI661708  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385123,968,643 - 123,968,741UniSTSGRCm38
MGSCv375124,418,652 - 124,418,750UniSTSGRCm37
Celera5121,041,158 - 121,041,256UniSTS
Cytogenetic Map5FUniSTS
Whitehead/MRC_RH51501.26UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001134767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001784648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001784649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001784650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001784651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001784652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001784653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001784654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001784655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003955610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003955611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_387558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC122753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000094320   ⟹   ENSMUSP00000091878
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5124,068,742 - 124,107,958 (+)Ensembl
GRCm38.p6 Ensembl5123,930,679 - 123,969,895 (+)Ensembl
Ensembl Acc Id: ENSMUST00000165148   ⟹   ENSMUSP00000127483
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5124,068,752 - 124,107,958 (+)Ensembl
GRCm38.p6 Ensembl5123,930,689 - 123,969,895 (+)Ensembl
Ensembl Acc Id: ENSMUST00000166983
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5124,068,752 - 124,074,708 (+)Ensembl
GRCm38.p6 Ensembl5123,930,689 - 123,936,645 (+)Ensembl
Ensembl Acc Id: ENSMUST00000169898
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5124,084,449 - 124,092,587 (+)Ensembl
GRCm38.p6 Ensembl5123,946,386 - 123,954,524 (+)Ensembl
Ensembl Acc Id: ENSMUST00000171881
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5124,092,565 - 124,095,673 (+)Ensembl
GRCm38.p6 Ensembl5123,954,502 - 123,957,610 (+)Ensembl
Ensembl Acc Id: ENSMUST00000197673
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5124,100,691 - 124,105,160 (+)Ensembl
GRCm38.p6 Ensembl5123,962,628 - 123,967,097 (+)Ensembl
Ensembl Acc Id: ENSMUST00000249271
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5124,065,481 - 124,076,451 (+)Ensembl
RefSeq Acc Id: NM_001134767   ⟹   NP_001128239
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395124,068,752 - 124,107,958 (+)NCBI
GRCm385123,930,689 - 123,969,895 (+)NCBI
MGSCv375124,380,698 - 124,419,904 (+)RGD
Celera5121,003,361 - 121,042,410 (+)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006530255   ⟹   XP_006530318
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395124,068,700 - 124,106,985 (+)NCBI
GRCm385123,930,634 - 123,968,922 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006530257   ⟹   XP_006530320
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395124,068,701 - 124,106,985 (+)NCBI
GRCm385123,930,634 - 123,968,922 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006530258   ⟹   XP_006530321
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395124,068,700 - 124,106,985 (+)NCBI
GRCm385123,930,634 - 123,968,922 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006530259   ⟹   XP_006530322
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395124,068,701 - 124,106,985 (+)NCBI
GRCm385123,930,635 - 123,968,922 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006530260   ⟹   XP_006530323
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395124,068,697 - 124,106,985 (+)NCBI
GRCm385123,930,631 - 123,968,922 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006530261   ⟹   XP_006530324
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395124,068,701 - 124,106,985 (+)NCBI
GRCm385123,930,635 - 123,968,922 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006530263   ⟹   XP_006530326
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395124,085,579 - 124,106,985 (+)NCBI
GRCm385123,947,514 - 123,968,922 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006530266   ⟹   XP_006530329
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395124,068,685 - 124,092,392 (+)NCBI
GRCm385123,930,618 - 123,954,330 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006530268   ⟹   XP_006530331
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395124,068,684 - 124,092,357 (+)NCBI
GRCm385123,930,618 - 123,954,294 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006530269   ⟹   XP_006530332
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395124,068,685 - 124,092,434 (+)NCBI
GRCm385123,930,618 - 123,954,371 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006530271   ⟹   XP_006530334
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395124,068,685 - 124,092,392 (+)NCBI
GRCm385123,930,619 - 123,954,330 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006530273   ⟹   XP_006530336
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395124,068,686 - 124,092,578 (+)NCBI
GRCm385123,930,619 - 123,954,515 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006530274   ⟹   XP_006530337
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395124,068,686 - 124,092,357 (+)NCBI
GRCm385123,930,619 - 123,954,294 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017320780   ⟹   XP_017176269
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395124,068,697 - 124,106,985 (+)NCBI
GRCm385123,930,631 - 123,968,922 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254331   ⟹   XP_030110191
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395124,068,754 - 124,106,985 (+)NCBI
GRCm385123,930,691 - 123,968,922 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254332   ⟹   XP_030110192
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395124,068,685 - 124,092,714 (+)NCBI
GRCm385123,930,619 - 123,954,651 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036164964   ⟹   XP_036020857
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395124,068,700 - 124,105,208 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001784648
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395124,068,697 - 124,099,370 (+)NCBI
GRCm385123,930,631 - 123,961,307 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001784649
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395124,068,695 - 124,106,985 (+)NCBI
GRCm385123,930,629 - 123,968,922 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001784650
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395124,068,696 - 124,106,985 (+)NCBI
GRCm385123,930,630 - 123,968,922 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001784651
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395124,068,683 - 124,099,371 (+)NCBI
GRCm385123,930,425 - 123,961,308 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001784652
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395124,068,685 - 124,106,985 (+)NCBI
GRCm385123,930,618 - 123,968,922 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001784653
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395124,068,686 - 124,106,985 (+)NCBI
GRCm385123,930,619 - 123,968,922 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001784654
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395124,068,686 - 124,106,985 (+)NCBI
GRCm385123,930,619 - 123,968,922 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001784655
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395124,068,686 - 124,106,985 (+)NCBI
GRCm385123,930,619 - 123,968,922 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003955610
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395124,068,697 - 124,106,985 (+)NCBI
GRCm385123,930,631 - 123,968,922 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003955611
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395124,068,686 - 124,106,985 (+)NCBI
GRCm385123,930,619 - 123,968,922 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004942475
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395124,068,697 - 124,106,985 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004942476
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395124,068,685 - 124,106,985 (+)NCBI
Sequence:
RefSeq Acc Id: XR_387558
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395124,068,695 - 124,106,985 (+)NCBI
GRCm385123,930,629 - 123,968,922 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001128239   ⟸   NM_001134767
- UniProtKB: F6WEA5 (UniProtKB/Swiss-Prot),   E9PVD1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006530336   ⟸   XM_006530273
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_006530332   ⟸   XM_006530269
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_006530329   ⟸   XM_006530266
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_006530334   ⟸   XM_006530271
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_006530331   ⟸   XM_006530268
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_006530337   ⟸   XM_006530274
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_006530323   ⟸   XM_006530260
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006530318   ⟸   XM_006530255
- Peptide Label: isoform X1
- UniProtKB: F6WEA5 (UniProtKB/Swiss-Prot),   E9PVD1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006530324   ⟸   XM_006530261
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006530321   ⟸   XM_006530258
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006530320   ⟸   XM_006530257
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006530322   ⟸   XM_006530259
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006530326   ⟸   XM_006530263
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_017176269   ⟸   XM_017320780
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_030110192   ⟸   XM_030254332
- Peptide Label: isoform X13
RefSeq Acc Id: XP_030110191   ⟸   XM_030254331
- Peptide Label: isoform X7
Ensembl Acc Id: ENSMUSP00000127483   ⟸   ENSMUST00000165148
Ensembl Acc Id: ENSMUSP00000091878   ⟸   ENSMUST00000094320
RefSeq Acc Id: XP_036020857   ⟸   XM_036164964
- Peptide Label: isoform X1
- UniProtKB: E9PVD1 (UniProtKB/Swiss-Prot),   F6WEA5 (UniProtKB/Swiss-Prot)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E9PVD1-F1-model_v2 AlphaFold E9PVD1 1-701 view protein structure

Promoters
RGD ID:6888058
Promoter ID:EPDNEW_M7480
Type:initiation region
Name:Ccdc62_1
Description:Mus musculus coiled-coil domain containing 62 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385123,930,711 - 123,930,771EPDNEW
RGD ID:6837218
Promoter ID:MM_KWN:44059
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_001134767
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365124,379,951 - 124,380,802 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2684996 AgrOrtholog
Ensembl Genes ENSMUSG00000061882 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000094320 ENTREZGENE
  ENSMUST00000094320.11 UniProtKB/Swiss-Prot
KEGG Report mmu:208908 UniProtKB/Swiss-Prot
MGD MGI:2684996 ENTREZGENE
NCBI Gene 208908 ENTREZGENE
PhenoGen Ccdc62 PhenoGen
UniProt CCD62_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  F6WEA5 ENTREZGENE
UniProt Secondary F6WEA5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-07 Ccdc62  coiled-coil domain containing 62  AI661708  expressed sequence AI661708  Data merged from RGD:1610573 737654 PROVISIONAL