FBXO4 (F-box protein 4) - Rat Genome Database

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Gene: FBXO4 (F-box protein 4) Chlorocebus sabaeus
Analyze
Symbol: FBXO4
Name: F-box protein 4
RGD ID: 18483154
Description: ENCODES a protein that exhibits protein homodimerization activity (inferred); ubiquitin protein ligase activity (inferred); ubiquitin-like ligase-substrate adaptor activity (inferred); INVOLVED IN cellular homeostasis (ortholog); cellular response to ionizing radiation (ortholog); cellular senescence (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasm (inferred); SCF ubiquitin ligase complex (inferred); ubiquitin ligase complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: F-box only protein 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1440,682,063 - 40,698,364 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl440,682,333 - 40,698,370 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607131,118,629 - 31,134,667 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
FBXO4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1440,682,063 - 40,698,364 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl440,682,333 - 40,698,370 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607131,118,629 - 31,134,667 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
FBXO4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38541,925,281 - 42,040,404 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl541,925,254 - 41,941,743 (+)EnsemblGRCh38hg38GRCh38
GRCh37541,925,383 - 41,941,845 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36541,961,113 - 41,977,429 (+)NCBINCBI36Build 36hg18NCBI36
Build 34541,961,112 - 41,970,940NCBI
Celera541,813,649 - 41,829,966 (+)NCBICelera
Cytogenetic Map5p13.1NCBI
HuRef541,878,053 - 41,894,370 (+)NCBIHuRef
CHM1_1541,927,215 - 41,943,529 (+)NCBICHM1_1
T2T-CHM13v2.0542,181,685 - 42,298,494 (+)NCBIT2T-CHM13v2.0
Fbxo4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39153,993,046 - 4,009,055 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl153,994,927 - 4,009,055 (-)EnsemblGRCm39 Ensembl
GRCm38153,963,564 - 3,979,573 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl153,965,445 - 3,979,573 (-)EnsemblGRCm38mm10GRCm38
MGSCv37153,913,564 - 3,929,573 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36153,915,461 - 3,929,573 (-)NCBIMGSCv36mm8
Celera153,825,238 - 3,841,215 (-)NCBICelera
Cytogenetic Map15A1NCBI
cM Map151.84NCBI
Fbxo4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8254,902,394 - 54,915,388 (-)NCBIGRCr8
mRatBN7.2253,174,798 - 53,187,792 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl253,174,798 - 53,187,792 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx260,273,074 - 60,286,042 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0258,331,816 - 58,344,784 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0253,363,530 - 53,376,542 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0253,797,954 - 53,811,134 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl253,797,954 - 53,811,134 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0272,830,881 - 72,844,061 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4253,871,746 - 53,884,722 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1253,800,345 - 53,812,541 (-)NCBI
Celera248,852,920 - 48,865,913 (-)NCBICelera
Cytogenetic Map2q16NCBI
Fbxo4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542626,046,742 - 26,063,388 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542626,046,742 - 26,066,747 (+)NCBIChiLan1.0ChiLan1.0
FBXO4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2468,209,415 - 68,425,734 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1566,441,446 - 66,579,338 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0568,336,673 - 68,474,481 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1573,500,841 - 73,517,051 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl573,500,850 - 73,517,051 (-)Ensemblpanpan1.1panPan2
FBXO4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1467,620,947 - 67,664,862 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl467,651,275 - 67,664,915 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha467,304,401 - 67,348,302 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0468,132,595 - 68,177,003 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl468,149,420 - 68,176,917 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1467,874,636 - 67,918,514 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0468,005,389 - 68,049,230 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0468,544,850 - 68,589,223 (-)NCBIUU_Cfam_GSD_1.0
Fbxo4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213230,497,928 - 230,516,528 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936518854,721 - 874,018 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936518855,304 - 873,927 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FBXO4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1626,707,470 - 26,752,024 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11626,707,470 - 26,751,134 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21627,971,745 - 27,988,034 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Fbxo4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475913,017,815 - 13,046,883 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475913,019,929 - 13,047,744 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FBXO4
402 total Variants

Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCSAT00000014893   ⟹   ENSCSAP00000012852
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl440,682,333 - 40,698,370 (+)Ensembl
RefSeq Acc Id: XM_007961484   ⟹   XP_007959675
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1440,682,063 - 40,698,364 (+)NCBI
Vero_WHO_p1.0NW_02366607131,118,632 - 31,134,654 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007961485   ⟹   XP_007959676
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1440,682,063 - 40,698,364 (+)NCBI
Vero_WHO_p1.0NW_02366607131,118,629 - 31,134,667 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007959675 (Get FASTA)   NCBI Sequence Viewer  
  XP_007959676 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000012852.1
RefSeq Acc Id: XP_007959675   ⟸   XM_007961484
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RW63 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007959676   ⟸   XM_007961485
- Peptide Label: isoform X2
Ensembl Acc Id: ENSCSAP00000012852   ⟸   ENSCSAT00000014893


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000016799 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000014893.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1280.50 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro F-box-like_dom_sf UniProtKB/TrEMBL
  F-box_dom UniProtKB/TrEMBL
  FBXO4 UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene FBXO4 ENTREZGENE
PANTHER F-BOX ONLY PROTEIN 4 UniProtKB/TrEMBL
  PTHR16008 UniProtKB/TrEMBL
Pfam F-box-like UniProtKB/TrEMBL
PROSITE FBOX UniProtKB/TrEMBL
SMART FBOX UniProtKB/TrEMBL
Superfamily-SCOP SSF81383 UniProtKB/TrEMBL
UniProt A0A0D9RW63 ENTREZGENE, UniProtKB/TrEMBL