CCDC181 (coiled-coil domain containing 181) - Rat Genome Database

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Gene: CCDC181 (coiled-coil domain containing 181) Chlorocebus sabaeus
Analyze
Symbol: CCDC181
Name: coiled-coil domain containing 181
RGD ID: 18469201
Description: ENCODES a protein that exhibits microtubule binding (inferred); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN manchette (ortholog); sperm flagellum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: coiled-coil domain-containing protein 181
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12559,624,426 - 59,658,597 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2559,626,896 - 59,658,421 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605561,299,271 - 61,333,863 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CCDC181
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12559,624,426 - 59,658,597 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2559,626,896 - 59,658,421 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605561,299,271 - 61,333,863 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CCDC181
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381169,394,870 - 169,460,669 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1169,394,870 - 169,460,669 (-)EnsemblGRCh38hg38GRCh38
GRCh371169,364,108 - 169,429,907 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361167,630,738 - 167,663,294 (-)NCBINCBI36Build 36hg18NCBI36
Celera1142,473,892 - 142,506,452 (-)NCBICelera
Cytogenetic Map1q24.2NCBI
HuRef1140,587,153 - 140,619,710 (-)NCBIHuRef
CHM1_11170,786,142 - 170,818,698 (-)NCBICHM1_1
T2T-CHM13v2.01168,750,193 - 168,816,015 (-)NCBIT2T-CHM13v2.0
Ccdc181
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391164,103,126 - 164,115,416 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1164,103,154 - 164,115,416 (+)EnsemblGRCm39 Ensembl
GRCm381164,275,598 - 164,287,847 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1164,275,585 - 164,287,847 (+)EnsemblGRCm38mm10GRCm38
MGSCv371166,205,729 - 166,217,978 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361166,112,279 - 166,124,517 (+)NCBIMGSCv36mm8
Celera1166,712,814 - 166,725,380 (+)NCBICelera
Cytogenetic Map1H2.2NCBI
cM Map171.59NCBI
Ccdc181
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81379,157,708 - 79,171,365 (+)NCBIGRCr8
mRatBN7.21376,624,567 - 76,638,224 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1376,624,567 - 76,638,224 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1379,243,025 - 79,256,669 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01380,547,030 - 80,560,674 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01377,801,696 - 77,815,324 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01382,574,980 - 82,588,637 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1382,574,966 - 82,588,640 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01387,458,873 - 87,472,530 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41380,040,171 - 80,053,828 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11380,054,358 - 80,068,016 (+)NCBI
Celera1376,358,535 - 76,371,400 (+)NCBICelera
Cytogenetic Map13q23NCBI
Ccdc181
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554627,821,226 - 7,838,892 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554627,820,176 - 7,838,931 (+)NCBIChiLan1.0ChiLan1.0
CCDC181
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2180,301,140 - 80,374,720 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1179,973,836 - 80,043,120 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01144,877,237 - 144,943,380 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11148,599,382 - 148,632,247 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1148,599,559 - 148,632,247 (-)Ensemblpanpan1.1panPan2
CCDC181
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1729,136,183 - 29,173,753 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl729,141,746 - 29,173,753 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha728,667,931 - 28,705,539 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0728,938,109 - 28,975,743 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl728,915,563 - 28,975,725 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1728,786,479 - 28,824,036 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0728,822,297 - 28,859,871 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0729,058,967 - 29,096,543 (+)NCBIUU_Cfam_GSD_1.0
Ccdc181
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934499,388,377 - 99,403,972 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648117,237,558 - 17,250,718 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648117,235,194 - 17,250,718 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC181
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl481,561,103 - 81,593,922 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1481,561,007 - 81,593,922 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2489,185,702 - 89,218,879 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Ccdc181
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248267,333,493 - 7,348,842 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248267,333,323 - 7,352,165 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 23 56
Low 13 14 4
Below cutoff 6

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000009167   ⟹   ENSCSAP00000007295
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2559,626,896 - 59,658,421 (+)Ensembl
RefSeq Acc Id: XM_007989585   ⟹   XP_007987776
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12559,624,431 - 59,658,597 (+)NCBI
Vero_WHO_p1.0NW_02366605561,299,914 - 61,333,460 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007989587   ⟹   XP_007987778
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12559,624,547 - 59,658,597 (+)NCBI
Vero_WHO_p1.0NW_02366605561,299,271 - 61,333,460 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037985984   ⟹   XP_037841912
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605561,299,571 - 61,333,460 (+)NCBI
RefSeq Acc Id: XM_037985985   ⟹   XP_037841913
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605561,299,914 - 61,333,863 (+)NCBI
RefSeq Acc Id: XM_037985986   ⟹   XP_037841914
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605561,299,914 - 61,333,863 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_007987776   ⟸   XM_007989585
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RFA6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007987778   ⟸   XM_007989587
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RFA6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000007295   ⟸   ENSCSAT00000009167
RefSeq Acc Id: XP_037841912   ⟸   XM_037985984
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RFA6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037841913   ⟸   XM_037985985
- Peptide Label: isoform X2
RefSeq Acc Id: XP_037841914   ⟸   XM_037985986
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000011089 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000009167.1 UniProtKB/TrEMBL
InterPro CCDC181 UniProtKB/TrEMBL
NCBI Gene CCDC181 ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 181 UniProtKB/TrEMBL
  PTHR14320 UniProtKB/TrEMBL
UniProt A0A0D9RFA6 ENTREZGENE, UniProtKB/TrEMBL