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Gene: ZNF500 (zinc finger protein 500) Chlorocebus sabaeus

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Symbol:

ZNF500

Name:

zinc finger protein 500

RGD ID:

18461794

Description:

ENCODES a protein that exhibits DNA binding (inferred); metal ion binding (inferred); zinc ion binding (inferred); INVOLVED IN regulation of DNA-templated transcription (inferred); regulation of gene expression (inferred); ASSOCIATED WITH epilepsy (ortholog); Idiopathic Generalized Epilepsy (ortholog); Kohlschutter-Tonz syndrome (ortholog); FOUND IN nucleus (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	4,432,050 - 4,443,777 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	4,432,575 - 4,443,396 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666068	26,218,052 - 26,230,037 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
ZNF500	Green Monkey	epilepsy		ISO	ZNF500 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Epilepsy	ClinVar	PMID:28492532
ZNF500	Green Monkey	Idiopathic Generalized Epilepsy		ISO	ZNF500 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Idiopathic generalized epilepsy	ClinVar	PMID:28492532
ZNF500	Green Monkey	Kohlschutter-Tonz syndrome		ISO	ZNF500 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Amelocerebrohypohidrotic syndrome	ClinVar	PMID:28492532
ZNF500	Green Monkey	Rubinstein-Taybi syndrome		ISO	ZNF500 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Rubinstein-Taybi syndrome	ClinVar	PMID:12114483 more ...
ZNF500	Green Monkey	short-rib thoracic dysplasia 9 with or without polydactyly		ISO	ZNF500 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Saldino-Mainzer syndrome	ClinVar	PMID:28492532

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
ZNF500	Green Monkey	regulation of DNA-templated transcription	involved_in	IEA	InterPro:IPR001909 and InterPro:IPR036051	150520179		InterPro	GO_REF:0000002
ZNF500	Green Monkey	regulation of gene expression	involved_in	IEA	PANTHER:PTN009031651	150520179		TreeGrafter	GO_REF:0000118

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
ZNF500	Green Monkey	nucleus	located_in	IEA	UniProtKB-SubCell:SL-0191	150520179		UniProt	GO_REF:0000044
ZNF500	Green Monkey	nucleus	located_in	IEA	PANTHER:PTN009031651	150520179		TreeGrafter	GO_REF:0000118
ZNF500	Green Monkey	nucleus	located_in	IEA	UniRule:UR000415288	150520179		UniProt	GO_REF:0000104
ZNF500	Green Monkey	nucleus	located_in	IEA	UniProtKB-KW:KW-0539	150520179		UniProt	GO_REF:0000043

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
ZNF500	Green Monkey	DNA binding	enables	IEA	UniProtKB-KW:KW-0238	150520179		UniProt	GO_REF:0000043
ZNF500	Green Monkey	metal ion binding	enables	IEA	UniProtKB-KW:KW-0479	150520179		UniProt	GO_REF:0000043
ZNF500	Green Monkey	protein binding	enables	ISO	UniProtKB:O43189 more ...	9068941	PMID:32296183	IntAct	PMID:32296183
ZNF500	Green Monkey	protein binding	enables	ISO	UniProtKB:O43464 more ...	9068941	PMID:32814053	IntAct	PMID:32814053
ZNF500	Green Monkey	zinc ion binding	enables	IEA	UniProtKB-KW:KW-0863	150520179		UniProt	GO_REF:0000043

PMID:22301074

ZNF500
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	4,432,050 - 4,443,777 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	4,432,575 - 4,443,396 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666068	26,218,052 - 26,230,037 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

ZNF500
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	4,744,245 - 4,767,162 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	4,748,239 - 4,767,624 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	4,798,240 - 4,817,163 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	4,740,816 - 4,757,167 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	16	5,009,595 - 5,025,937 (-)	NCBI		Celera
Cytogenetic Map	16	p13.3	NCBI
HuRef	16	4,767,343 - 4,783,685 (-)	NCBI		HuRef
CHM1_1	16	4,801,579 - 4,817,929 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	16	4,774,468 - 4,796,609 (-)	NCBI		T2T-CHM13v2.0

ZNF500
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	5,279,506 - 5,296,246 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	9,069,656 - 9,086,396 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	3,673,146 - 3,692,219 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	4,839,112 - 4,857,595 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	4,839,112 - 4,857,595 (-)	Ensembl	panpan1.1		panPan2

ZNF500
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	36,646,310 - 36,663,266 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	36,654,503 - 36,663,280 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	38,038,465 - 38,050,534 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	36,849,256 - 36,866,298 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	36,857,470 - 36,866,297 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	36,644,974 - 36,660,690 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	36,536,182 - 36,553,427 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	36,938,629 - 36,955,588 (+)	NCBI		UU_Cfam_GSD_1.0

ZNF500
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	3	37,642,424 - 37,652,378 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	38,695,722 - 38,712,677 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Variants in ZNF500
333 total Variants

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
76	36	20	36	36	60	20


RefSeq Transcripts	XM_007984573	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037989887	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000036	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000007049 ⟹ ENSCSAP00000005237

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	5	4,432,575 - 4,443,396 (-)	Ensembl

RefSeq Acc Id:

XM_007984573 ⟹ XP_007982764

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	5	4,432,050 - 4,443,777 (-)	NCBI
Vero_WHO_p1.0	NW_023666068	26,218,052 - 26,230,037 (+)	NCBI

Sequence:

show sequence

ACGGCCTGGTTTCCACACCTGGTTTGGGGTCTTAGGCCCCAGCTCTGGCGTCTCGGGTTGCAGAGCCTGAGGCCGGCAGTCCCACTCCCGCCGAGACCCGTCACTCCGGTCCTGCCCCGAACTGCCCA
CGGCCCGCAGGGCTTCCAGGCCCTGAAAAAAAACGCTCTTCCTGTGTCTGGCCAGAGGTATAGAGAGAGACAGGTTCGACTCTAAGGCCTGAGAAGGAACAAGGCCCACCGGAAGCAATGGCCACCGT
CCCTGACCTCCAACCCCTGCCAACCTTGGAGCAGGACGTGGAACAGGATGAGATCCTGATTGTGAAGGTGGAGGAGGACTTCTGCTTGGAAGAGGAGCCCTCCGTGGAGTCGGAGGACCCCAGCCCTG
AGACTTTCCGCCAGCTCTTCCGGCTCTTCTGCTACCAGGAGGTGGCTGGGCCCCGGGAGGCCCTGAGCCGCCTCTGGGAGCTGTGCTGCCGCTGGCTGCGGCCGGAGCTGCGCACTAAGGAGCAGATC
CTGGAGCTGCTGGTGCTGGAGCAGTTCCTGACTGTGCTGCCAGGGGAGATCCAGGCTCGAGTGCGTGAGCAGCAGCCGGAGAGTGGTGAGGAGGCCGTGGTCCTCGTGGAAGGGCTGCAGCGGGAGCC
CAGGAAACACAGGCAGCGGGGCTCAGAGCTGCTTTTTGATGACGAGGTGCCCCTCAGAATGGAGGGACAGTCCTTAAAACGCCAGGCAGAGGCTCAGCCAGAGGATCTGTCCCTGGAGGAAGAGGCTC
GATGCCCCAGCCAGCAGCCCCCAGCCCAGCTGAGCCACAGGCCACAGAGGGGCCCACTGTTGTGGCCAGAGAGGGGCCCTCCGGCCGCCCGGCATCAGGAGATGGCGTCAGCCTCGCCCTTCCTTTCG
GCCTGGTCCCAGGCGCCCGTGAACTTGGAGGACATGGCTGTATACCTTTCTGGGGAGGAGCCAGGATGCCTGGACCCAGCTGAGCGGGACGTGCCGCTGGAGAATGAAGGACTTGGGATCCAGTTAGA
GGACGGCCGTGATGGCAGGGAGGATGCCCCAGTGAGAATGGAGTGGTACCGAGTGCTGTCAGCGCGATGCCAGGGGCCTGGCCACCCACTCCCAGGTCAGAGGCCAGCCCCAGTCAGGGGCTTGGTCA
GGCCTGAGCAGCCAAGAGGCGGCCCCCCACCAGGAAGAGGGGCTTCCCATGGGACTGACAAGCCATACACCTGCCCCGAATGTGGCAAAGGCTTCAGCAAGACGTCTCACTTGACCAAGCACCAGCGC
ACACACACGGGCGAGCGGCCTTACAAGTGCCTGGTCTGTGGGAAGGGCTTTAGCGACCGCTCCAACTTCAGCACGCACCAGAGGGTGCACACGGGCGAGAAGCCCTACCCATGCCCCGAGTGCGGGAA
GCGCTTCAGCCAGAGCTCCAGCCTGGTCATCCACCGCAGGACGCACAGCGGGGAGCGGCCCTATGCCTGCACCCAGTGCGGGAAGCGCTTCAACAACAGCTCCCACTTCAGCGCGCACCGCCGGACGC
ACACAGGTGAGAAGCCCTACACCTGCCCGGCCTGTGGCAGGGGCTTCCGCCGGGGCACCGACCTGCACAAGCACCAGCGGACCCATACGAGGGCAGGCTCTTTGCTGACGCTCCAGCCGGTGGCTCCT
GGAGGCCCCGGGGCCAAGGCCTGATCACCATGCCTGAAACTCCCTTTCCCAGACTCTCGTCCCTGGGCACAGCATTCAGGAAGCTGCCAGAGAGCCTGGTCCAGAAGCATTGCCAGCTGCCTGTTTCC
TTCCATGGCCCAGTGTGAGGCCATCAGGGGACATTTGGGATGCCCGGGCCGTGGAGGAAGCTGGGCACTGGGTGCAGAGCAAGGGCAAGGACAGGCTCTGTTGAGTGTCCAGTGGCAGCCAGAACAGG
CGACACAGAGCAGGGGCTTCAGCCACAGAGACGCACTCAGGAGGCCAGAAGCCCACACCCAAGGTGTTCCTGAAGGGCCCGGGAGGGTCCATCAGCTGCCTCCAGCATCCAGTGGCTGCTGGTGTACA
GCCTCATCACCGCGTCCCTACCCCTCCCCTGTGTGTCTGTGACCCTGTGTGCCATCTCTGTGTGTCCCTCCCCACCCACCCGACGTCCCCCGCCTTTTTTTTTTTTTTGAGACAGGGCCTTGCTCTGT
CCCCCAGGCAGGAGTACAGTGCCATGATCATAGCTCA

hide sequence

RefSeq Acc Id:

XM_037989887 ⟹ XP_037845815

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666068	26,218,052 - 26,230,037 (+)	NCBI


Protein RefSeqs	XP_007982764	(Get FASTA)	NCBI Sequence Viewer
	XP_037845815	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000005237.1

RefSeq Acc Id:

XP_007982764 ⟸ XM_007984573

Ensembl Acc Id:

ENSCSAP00000005237 ⟸ ENSCSAT00000007049

RefSeq Acc Id:

XP_037845815 ⟸ XM_037989887

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000008993	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000007049.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.4020.10	UniProtKB/TrEMBL
	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	KRAB	UniProtKB/TrEMBL
	KRAB_dom_sf	UniProtKB/TrEMBL
	SCAN_dom	UniProtKB/TrEMBL
	SCAN_sf	UniProtKB/TrEMBL
	Zinc_finger	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/TrEMBL
KEGG Report	csab:103227752	UniProtKB/TrEMBL
NCBI Gene	ZNF500	ENTREZGENE
PANTHER	PR DOMAIN ZINC FINGER PROTEIN	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN 154-LIKE	UniProtKB/TrEMBL
Pfam	KRAB	UniProtKB/TrEMBL
	SCAN	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
PROSITE	SCAN_BOX	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
SMART	SCAN	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	Retrovirus capsid dimerization domain-like	UniProtKB/TrEMBL
	SSF109640	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
UniProt	A0A0D9R9E8_CHLSB	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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