ZNF500 (zinc finger protein 500) - Rat Genome Database

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Gene: ZNF500 (zinc finger protein 500) Chlorocebus sabaeus
Analyze
Symbol: ZNF500
Name: zinc finger protein 500
RGD ID: 18461794
Description: ENCODES a protein that exhibits DNA binding (inferred); metal ion binding (inferred); INVOLVED IN regulation of DNA-templated transcription (inferred); ASSOCIATED WITH epilepsy (ortholog); idiopathic generalized epilepsy (ortholog); Kohlschutter-Tonz syndrome (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Bonobo
Dog
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.154,432,050 - 4,443,777 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl54,432,575 - 4,443,396 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606826,218,052 - 26,230,037 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
ZNF500
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.154,432,050 - 4,443,777 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl54,432,575 - 4,443,396 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606826,218,052 - 26,230,037 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ZNF500
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38164,744,245 - 4,767,162 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl164,748,239 - 4,767,624 (-)EnsemblGRCh38hg38GRCh38
GRCh37164,798,240 - 4,817,163 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36164,740,816 - 4,757,167 (-)NCBINCBI36Build 36hg18NCBI36
Celera165,009,595 - 5,025,937 (-)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef164,767,343 - 4,783,685 (-)NCBIHuRef
CHM1_1164,801,579 - 4,817,929 (-)NCBICHM1_1
T2T-CHM13v2.0164,774,468 - 4,796,609 (-)NCBIT2T-CHM13v2.0
ZNF500
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2185,279,506 - 5,296,246 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1169,069,656 - 9,086,396 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0163,673,146 - 3,692,219 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1164,839,112 - 4,857,595 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl164,839,112 - 4,857,595 (-)Ensemblpanpan1.1panPan2
ZNF500
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1636,646,310 - 36,663,266 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl636,654,503 - 36,663,280 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha638,038,465 - 38,050,534 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0636,849,256 - 36,866,298 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl636,857,470 - 36,866,297 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1636,644,974 - 36,660,690 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0636,536,182 - 36,553,427 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0636,938,629 - 36,955,588 (+)NCBIUU_Cfam_GSD_1.0
ZNF500
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1337,642,424 - 37,652,378 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2338,695,722 - 38,712,677 (+)NCBISscrofa10.2Sscrofa10.2susScr3


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 36 18 60
Below cutoff 2

Sequence


RefSeq Acc Id: ENSCSAT00000007049   ⟹   ENSCSAP00000005237
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl54,432,575 - 4,443,396 (-)Ensembl
RefSeq Acc Id: XM_007984573   ⟹   XP_007982764
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.154,432,050 - 4,443,777 (-)NCBI
Vero_WHO_p1.0NW_02366606826,218,052 - 26,230,037 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037989887   ⟹   XP_037845815
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366606826,218,052 - 26,230,037 (+)NCBI
Protein Sequences
Protein RefSeqs XP_007982764 (Get FASTA)   NCBI Sequence Viewer  
  XP_037845815 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000005237.1
RefSeq Acc Id: XP_007982764   ⟸   XM_007984573
RefSeq Acc Id: ENSCSAP00000005237   ⟸   ENSCSAT00000007049
RefSeq Acc Id: XP_037845815   ⟸   XM_037989887


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000008993 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000007049.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.4020.10 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  SCAN_dom UniProtKB/TrEMBL
  SCAN_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report csab:103227752 UniProtKB/TrEMBL
NCBI Gene ZNF500 ENTREZGENE
PANTHER KRAB DOMAIN C2H2 ZINC FINGER UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 746-RELATED UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  SCAN UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PROSITE SCAN_BOX UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART SCAN UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP Retrovirus capsid dimerization domain-like UniProtKB/TrEMBL
  SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A0D9R9E8_CHLSB UniProtKB/TrEMBL