PTGDR2 (prostaglandin D2 receptor 2) - Rat Genome Database

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Gene: PTGDR2 (prostaglandin D2 receptor 2) Chlorocebus sabaeus
Analyze
Symbol: PTGDR2
Name: prostaglandin D2 receptor 2
RGD ID: 18452614
Description: ENCODES a protein that exhibits complement receptor activity (inferred); G protein-coupled receptor activity (inferred); prostaglandin D receptor activity (inferred); INVOLVED IN adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (ortholog); calcium-mediated signaling (ortholog); chemotaxis (ortholog); ASSOCIATED WITH aspirin-induced respiratory disease (ortholog); asthma (ortholog); COVID-19 (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1112,989,750 - 12,994,979 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl112,992,188 - 12,993,378 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038110,356,771 - 110,361,853 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PTGDR2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1112,989,750 - 12,994,979 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl112,992,188 - 12,993,378 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038110,356,771 - 110,361,853 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
PTGDR2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381160,850,933 - 60,855,950 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1160,850,933 - 60,855,950 (-)EnsemblGRCh38hg38GRCh38
GRCh371160,618,406 - 60,623,423 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361160,374,974 - 60,380,020 (-)NCBINCBI36Build 36hg18NCBI36
Build 341160,374,982 - 60,380,020NCBI
Celera1157,979,245 - 57,984,291 (-)NCBICelera
Cytogenetic Map11q12.2NCBI
HuRef1156,964,519 - 56,969,565 (-)NCBIHuRef
CHM1_11160,484,721 - 60,489,767 (-)NCBICHM1_1
T2T-CHM13v2.01160,802,052 - 60,807,069 (-)NCBIT2T-CHM13v2.0
Ptgdr2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391910,901,883 - 10,919,875 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1910,914,524 - 10,919,875 (+)EnsemblGRCm39 Ensembl
GRCm381910,924,519 - 10,942,511 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1910,937,160 - 10,942,511 (+)EnsemblGRCm38mm10GRCm38
MGSCv371911,011,650 - 11,017,001 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361911,004,205 - 11,009,556 (+)NCBIMGSCv36mm8
Celera1911,630,059 - 11,635,420 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map197.4NCBI
Ptgdr2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81217,010,183 - 217,015,044 (+)NCBIGRCr8
mRatBN7.21207,585,088 - 207,590,275 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1207,587,917 - 207,589,213 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1215,962,754 - 215,964,050 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01223,023,462 - 223,024,758 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01215,717,153 - 215,718,449 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01226,976,455 - 226,995,641 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1226,993,250 - 226,994,849 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01234,055,957 - 234,061,329 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41213,437,202 - 213,438,498 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11213,595,631 - 213,596,928 (+)NCBI
Celera1205,079,903 - 205,081,199 (+)NCBICelera
Cytogenetic Map1q43NCBI
Ptgdr2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555115,536,642 - 5,537,926 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555115,536,602 - 5,539,944 (-)NCBIChiLan1.0ChiLan1.0
PTGDR2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2962,020,551 - 62,059,863 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11163,064,279 - 63,103,748 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01156,114,166 - 56,153,820 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11159,554,874 - 59,557,653 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1159,556,460 - 59,557,647 (-)Ensemblpanpan1.1panPan2
PTGDR2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11855,426,632 - 55,431,916 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1855,429,308 - 55,430,510 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1854,002,288 - 54,003,490 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01856,474,768 - 56,479,958 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1856,477,498 - 56,478,700 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11855,534,988 - 55,536,190 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01855,156,526 - 55,157,727 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01856,037,704 - 56,038,906 (+)NCBIUU_Cfam_GSD_1.0
Ptgdr2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494711,955,087 - 11,958,521 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365812,067,546 - 2,070,893 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365812,069,355 - 2,072,535 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTGDR2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl210,892,011 - 10,903,017 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1210,891,280 - 10,897,194 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2210,489,025 - 10,494,383 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Ptgdr2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624926263,942 - 268,875 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
74 34 20 34 34 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000019268   ⟹   ENSCSAP00000018688
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl112,992,188 - 12,993,378 (+)Ensembl
RefSeq Acc Id: XM_007996620   ⟹   XP_007994811
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1112,989,750 - 12,994,979 (+)NCBI
Vero_WHO_p1.0NW_023666038110,356,771 - 110,361,853 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037999257   ⟹   XP_037855185
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666038110,356,831 - 110,361,853 (+)NCBI
Protein Sequences
Protein RefSeqs XP_007994811 (Get FASTA)   NCBI Sequence Viewer  
  XP_037855185 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000018688.1
RefSeq Acc Id: XP_007994811   ⟸   XM_007996620
- UniProtKB: A0A0D9SCU9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000018688   ⟸   ENSCSAT00000019268
RefSeq Acc Id: XP_037855185   ⟸   XM_037999257
- UniProtKB: A0A0D9SCU9 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000019178 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000019268.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro Formyl_rcpt-rel UniProtKB/TrEMBL
  GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
KEGG Report csab:103234610 UniProtKB/TrEMBL
NCBI Gene PTGDR2 ENTREZGENE
PANTHER CHEMOTACTIC RECEPTOR UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/TrEMBL
PRINTS FMETLEUPHER UniProtKB/TrEMBL
  GPCRRHODOPSN UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A0D9SCU9 ENTREZGENE, UniProtKB/TrEMBL