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Gene: TMEM165 (transmembrane protein 165) Chlorocebus sabaeus

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Symbol:

TMEM165

Name:

transmembrane protein 165

RGD ID:

18432094

Description:

ENCODES a protein that exhibits calcium ion transmembrane transporter activity (inferred); manganese ion transmembrane transporter activity (inferred); metal ion transmembrane transporter activity (inferred); INVOLVED IN calcium ion transmembrane transport (inferred); calcium ion transport (inferred); Golgi calcium ion homeostasis (inferred); ASSOCIATED WITH congenital disorder of glycosylation (ortholog); congenital disorder of glycosylation type IIk (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN cis-Golgi network membrane (inferred); endosome membrane (inferred); Golgi apparatus (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	13,136,414 - 13,167,521 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	13,135,845 - 13,167,499 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666066	13,893,044 - 13,924,787 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

congenital disorder of glycosylation (ISO)

congenital disorder of glycosylation type IIk (ISO)

Experimental Liver Cirrhosis (ISO)

gastrointestinal stromal tumor (ISO)

Hirschsprung's disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

calcium ion transmembrane transport (IEA)

calcium ion transport (IEA)

Golgi calcium ion homeostasis (IEA)

Golgi calcium ion transport (IEA)

intracellular calcium ion homeostasis (IEA)

manganese ion transmembrane transport (IEA)

manganese ion transport (IEA)

protein N-linked glycosylation (IEA)

regulation of lysosomal lumen pH (IEA)

Cellular Component

cis-Golgi network membrane (IEA)

endosome membrane (IEA)

Golgi apparatus (IEA)

intracellular membrane-bounded organelle (IEA)

lysosomal membrane (IEA)

membrane (IEA)

trans-Golgi network membrane (IEA)

Molecular Function

calcium ion transmembrane transporter activity (IEA)

manganese ion transmembrane transporter activity (IEA)

metal ion transmembrane transporter activity (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

TMEM165
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	13,136,414 - 13,167,521 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	13,135,845 - 13,167,499 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666066	13,893,044 - 13,924,787 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

TMEM165
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	55,395,957 - 55,453,397 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	55,395,957 - 55,453,397 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	56,262,124 - 56,292,342 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	55,957,114 - 55,987,099 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	4	53,763,917 - 53,794,196 (+)	NCBI		Celera
Cytogenetic Map	4	q12	NCBI
HuRef	4	52,211,028 - 52,241,329 (+)	NCBI		HuRef
CHM1_1	4	56,297,232 - 56,327,471 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	4	58,884,101 - 58,941,541 (+)	NCBI		T2T-CHM13v2.0

Tmem165
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	76,331,727 - 76,357,091 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	76,331,727 - 76,357,092 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	76,183,880 - 76,209,244 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	76,183,880 - 76,209,245 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	76,612,905 - 76,638,269 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	77,258,725 - 77,284,019 (+)	NCBI		MGSCv36	mm8
Celera	5	73,455,356 - 73,480,717 (+)	NCBI		Celera
Cytogenetic Map	5	C3.3	NCBI
cM Map	5	40.56	NCBI

Tmem165
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	32,347,688 - 32,372,916 (-)	NCBI		GRCr8
mRatBN7.2	14	31,993,489 - 32,018,717 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	31,993,493 - 32,018,717 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	32,359,800 - 32,385,021 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	33,667,692 - 33,692,913 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	32,152,809 - 32,178,030 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	34,503,037 - 34,528,262 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	34,503,038 - 34,528,262 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	34,290,287 - 34,315,512 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	34,265,575 - 34,290,800 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	34,265,575 - 34,290,800 (-)	NCBI
Celera	14	31,294,526 - 31,319,751 (-)	NCBI		Celera
Cytogenetic Map	14	p11	NCBI

Tmem165
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955447	15,538,958 - 15,543,892 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955447	15,538,958 - 15,543,885 (-)	NCBI	ChiLan1.0	ChiLan1.0

TMEM165
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	74,339,011 - 74,396,393 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	74,543,016 - 74,600,312 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	68,484,896 - 68,541,808 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	75,075,427 - 75,104,629 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	75,075,427 - 75,104,629 (-)	Ensembl	panpan1.1		panPan2

TMEM165
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	13	47,658,408 - 47,683,519 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	13	47,658,330 - 47,682,866 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	13	47,615,826 - 47,640,649 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	13	48,269,540 - 48,294,369 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	13	48,269,177 - 48,293,716 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	13	47,944,501 - 47,969,326 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	13	47,472,885 - 47,498,052 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	13	48,421,927 - 48,446,757 (+)	NCBI		UU_Cfam_GSD_1.0

Tmem165
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	28,512,769 - 28,537,702 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936482	17,760,384 - 17,785,587 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936482	17,760,532 - 17,785,466 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TMEM165
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	54,751,572 - 54,787,886 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	54,751,570 - 54,796,352 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	58,762,005 - 58,769,745 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Tmem165
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624761	14,038,758 - 14,066,894 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624761	14,039,698 - 14,066,750 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
76	36	20	36	36	60	20

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007998684	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007998685	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000034	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000003042 ⟹ ENSCSAP00000001335

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	7	13,135,845 - 13,167,499 (-)	Ensembl

RefSeq Acc Id:

XM_007998684 ⟹ XP_007996875

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	7	13,136,414 - 13,167,521 (-)	NCBI
Vero_WHO_p1.0	NW_023666066	13,893,044 - 13,924,787 (-)	NCBI

Sequence:

show sequence

GAGAGGAGTCGGGGCTGGGTCGCGCGGAGTCGGTTGGTTGACTCCAGTGTAGCCGCCGCCTGAG
AGGACTGGGGACTGCCCCTCACCTTAGTCCCGCCGCTTGCACTTCCCGGATGGTGCTGACTGCT
CTCTAAGGGGCGGCGGCGGCGAGTCGTGAGGACGCGCCGCGAAGGCTGTTCGGGTTGAGGCTTC
CCGTCGCCGCACTTCCTCTTGCGGTGCCCGTGCGCGGCCGGCCCGGCGGGCGGGATGGCGGCCG
CGGCCCCAGGGAACGGCCGCGCATCGGCGCCCCAGCTGCTTCTGCTCTTTCTGGTTCCACTGCT
GTGGGCCCCGGCTGCGGTCCGGGCCGGCCCCGATGAAGACCTTAGCCACCGGAACAAAGTATCG
CCGGCGTTTGCCCAGCAGCTGCAGCAGCAGCCGGTGGCCGTGCAGGGCCCCGAGCCGGCCCGGG
TCGAGAAAATATTTACACCAGCAGCTCCAGTTCATACCAGTAAAGAAGATCCTGCTACCCAAAC
TAATTTGGGATTTATCCATGCATTTGTCGCTGCCATATCAGTTATTATTGTATCTGAATTGGGT
GATAAGACATTTTTTATAGCAGCCATCATGGCAATGCGCTATAACCGCCTGACCGTTCTGGCTG
GTGCAATGCTTGCCTTGGGACTAATGACGTGCTTGTCAGTTTTGTTTGGCTATGCCACTACAGT
CATCCCCAGGGTCTATACATACTATGTTTCAACTGTATTATTTGCCATTTTTGGCATTAGAATG
CTTCGGGAAGGCTTAAAGATGAGCCCTGATGAGGGTCAGGAGGAACTGGAAGAAGTTCAAGCTG
AATTAAAGAAGAAAGATGAAGAATTCCAACGAACCAAACTTTTAAATGGACCAGGAGATGTCGA
AACGGGTACAAGCATAACAGTACCTCAGAAAAAGTGGTTGCATTTTATTTCACCCATTTTTGTT
CAAGCTCTTACGTTAACATTCTTAGCAGAATGGGGTGATCGCTCTCAACTAACTACAATTGTAT
TGGCAGCTAGAGAGGACCCCTATGGTGTAGCTGTGGGTGGAACTGTGGGGCACTGCCTGTGCAC
GGGATTGGCAGTAATTGGAGGAAGAATGATAGCACAGAAAATCTCTGTCAGAACTGTGACAATC
ATAGGAGGCATCGTTTTTTTGGCGTTTGCATTTTCTGCACTATTTATAAGCCCTGATTCTGGTT
TTTGACAAGCTGTTTGTTCATCTGTATTTAGTTTAAAATAGATAATATTATCTTTCTGTACATA
GTGTACATTACAACTAAAAGTGATGGAAAAATACTGTATTTTGTAGCACTGATTTGTGAGTTTG
ACCCATTATTATGTTTGAGATATAATCATTGATTCTATTTGTAACAAGGAGTTTTAAAAGAAAC
CTGACTTCTAAGTGTGGGTTTTTTCTCTCTCCAGCATAATTATGTTAATATGGTCCCCATTTTT
ATTTTGGTGCAGAACTGTTGTGCAGTGGGGTCTACTATGCGATTTTCTTTCAGCACTGACCCCT
TTTTAAGGAATACAAATTTTCTCCTTCATCACTTAGGCGTTTTAAAGATGTTTACCTTAAAAAT
TTTCTTGGGGAAAGAATGAATGAATTTCTATGTTTTAAAACATTTCCCTGAGCCAGTAAGCAGT
AGTTTAATCATCGGTCTTTTCAAAATTAGGTGTTTAAAAAAAGAGACATATATGATATTACTGT
TATGTCAATAACATGGTACAGTAAGAACTGTCTGCCAGGTCATTCTTCCTCTCTTTTTTTTTTT
AATTGGGTAGGACACCCAATATTAAAACAGTCAATATTTGACAACGTGGAATTACCAAATTAAA
AGAGAATACTATGAATGTATTCATATTTTTTCTATATTGAATAAACAATGTAACATAGATACAA
TATAAATAAAAGTGGTATGACCAGTG

hide sequence

Protein Sequences


Protein RefSeqs	XP_007996875	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000001335
	ENSCSAP00000001335.1

RefSeq Acc Id:	XP_007996875 ⟸ XM_007998684
- UniProtKB:	A0A0D9QY96 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCSAP00000001335 ⟸ ENSCSAT00000003042

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000005013	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000003042.1	UniProtKB/TrEMBL
InterPro	Gdt1	UniProtKB/TrEMBL
	GDT1-like_CS	UniProtKB/TrEMBL
KEGG Report	csab:103235666	UniProtKB/TrEMBL
NCBI Gene	TMEM165	ENTREZGENE
PANTHER	PTHR12608	UniProtKB/TrEMBL
	TRANSMEMBRANE PROTEIN 165	UniProtKB/TrEMBL
Pfam	UPF0016	UniProtKB/TrEMBL
PROSITE	UPF0016	UniProtKB/TrEMBL
UniProt	A0A0D9QY96	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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