PGLYRP2 (peptidoglycan recognition protein 2) - Rat Genome Database

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Gene: PGLYRP2 (peptidoglycan recognition protein 2) Chlorocebus sabaeus
Analyze
Symbol: PGLYRP2
Name: peptidoglycan recognition protein 2
RGD ID: 18406676
Description: ENCODES a protein that exhibits N-acetylmuramoyl-L-alanine amidase activity (inferred); peptidoglycan binding (inferred); peptidoglycan immune receptor activity (inferred); INVOLVED IN biological process involved in interaction with host (ortholog); negative regulation of natural killer cell differentiation involved in immune response (ortholog); negative regulation of type II interferon production (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: N-acetylmuramoyl-L-alanine amidase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1614,072,310 - 14,084,014 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl614,072,423 - 14,082,798 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660745,424,409 - 5,435,504 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PGLYRP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1614,072,310 - 14,084,014 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl614,072,423 - 14,082,798 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660745,424,409 - 5,435,504 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
PGLYRP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381915,468,645 - 15,479,501 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1915,468,645 - 15,498,956 (-)EnsemblGRCh38hg38GRCh38
GRCh371915,579,456 - 15,590,312 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361915,440,456 - 15,451,315 (-)NCBINCBI36Build 36hg18NCBI36
Build 341915,440,462 - 15,451,312NCBI
Celera1915,476,268 - 15,487,143 (-)NCBICelera
Cytogenetic Map19p13.12NCBI
HuRef1915,147,207 - 15,158,066 (-)NCBIHuRef
CHM1_11915,579,067 - 15,589,927 (-)NCBICHM1_1
T2T-CHM13v2.01915,593,641 - 15,604,523 (-)NCBIT2T-CHM13v2.0
Pglyrp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391732,631,433 - 32,643,157 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1732,631,433 - 32,643,141 (-)EnsemblGRCm39 Ensembl
GRCm381732,412,459 - 32,424,219 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1732,412,459 - 32,424,167 (-)EnsemblGRCm38mm10GRCm38
MGSCv371732,550,045 - 32,557,920 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361732,550,306 - 32,561,112 (-)NCBIMGSCv36mm8
Celera1733,325,622 - 33,333,482 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1717.56NCBI
Pglyrp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8712,069,414 - 12,082,437 (-)NCBIGRCr8
mRatBN7.2711,418,674 - 11,432,162 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl711,418,880 - 11,427,773 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx714,237,304 - 14,246,286 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0716,114,726 - 16,123,712 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0713,986,312 - 13,995,267 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0714,426,481 - 14,435,987 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl714,429,701 - 14,435,967 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0714,580,379 - 14,588,764 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4712,995,858 - 12,996,949 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera79,530,143 - 9,537,285 (-)NCBICelera
Cytogenetic Map7q11NCBI
Pglyrp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554957,785,193 - 7,796,210 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554957,785,398 - 7,792,158 (+)NCBIChiLan1.0ChiLan1.0
PGLYRP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22020,378,029 - 20,396,483 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11919,380,830 - 19,399,218 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01914,999,893 - 15,012,376 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11915,986,083 - 15,997,726 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1915,986,090 - 15,997,726 (-)Ensemblpanpan1.1panPan2
PGLYRP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12046,724,906 - 46,730,227 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2046,726,224 - 46,730,321 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2046,572,665 - 46,577,974 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02047,211,739 - 47,217,048 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2047,210,950 - 47,217,128 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12046,446,615 - 46,451,923 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02046,863,271 - 46,868,579 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02047,136,764 - 47,142,073 (+)NCBIUU_Cfam_GSD_1.0
Pglyrp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118205,489,000 - 205,495,525 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365965,038,452 - 5,044,569 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365965,038,452 - 5,043,172 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PGLYRP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl262,134,533 - 62,140,184 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1262,135,578 - 62,140,180 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2261,567,649 - 61,572,250 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pglyrp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249012,554,048 - 2,561,826 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249012,554,303 - 2,562,436 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
4 3 17 19 19 2 1

Sequence


Ensembl Acc Id: ENSCSAT00000004114   ⟹   ENSCSAP00000002373
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl614,072,423 - 14,082,798 (-)Ensembl
RefSeq Acc Id: XM_007995596   ⟹   XP_007993787
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1614,072,420 - 14,084,014 (-)NCBI
Vero_WHO_p1.0NW_0236660745,424,409 - 5,435,504 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007993787 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000002373
  ENSCSAP00000002373.1
RefSeq Acc Id: XP_007993787   ⟸   XM_007995596
- UniProtKB: A0A0D9R184 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000002373   ⟸   ENSCSAT00000004114


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000006074 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000004114.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.80.10 UniProtKB/TrEMBL
InterPro Amidase/PGRP_sf UniProtKB/TrEMBL
  Amidase_domain UniProtKB/TrEMBL
  PGRP UniProtKB/TrEMBL
  PGRP_domain_met/bac UniProtKB/TrEMBL
NCBI Gene PGLYRP2 ENTREZGENE
PANTHER N-ACETYLMURAMOYL-L-ALANINE AMIDASE UniProtKB/TrEMBL
  PTHR11022 UniProtKB/TrEMBL
Pfam Amidase_2 UniProtKB/TrEMBL
SMART Ami_2 UniProtKB/TrEMBL
  PGRP UniProtKB/TrEMBL
Superfamily-SCOP SSF55846 UniProtKB/TrEMBL
UniProt A0A0D9R184 ENTREZGENE, UniProtKB/TrEMBL