RNASE7 (ribonuclease A family member 7) - Rat Genome Database

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Gene: RNASE7 (ribonuclease A family member 7) Chlorocebus sabaeus
Analyze
Symbol: RNASE7
Name: ribonuclease A family member 7
RGD ID: 18401121
Description: ENCODES a protein that exhibits lipopolysaccharide binding (ortholog); peptidoglycan binding (ortholog); INVOLVED IN antibacterial humoral response (ortholog); antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); purine nucleoside phosphorylase deficiency (ortholog); FOUND IN cytoplasm (ortholog); extracellular region (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ribonuclease 7
RGD Orthologs
Human
Chinchilla
Bonobo
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12921,515,069 - 21,517,963 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605924,918,340 - 24,919,168 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RNASE7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12921,515,069 - 21,517,963 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605924,918,340 - 24,919,168 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
RNASE7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381421,042,362 - 21,044,233 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1421,042,316 - 21,044,234 (+)EnsemblGRCh38hg38GRCh38
GRCh371421,510,521 - 21,512,392 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361420,580,225 - 20,582,232 (+)NCBINCBI36Build 36hg18NCBI36
Build 341420,580,250 - 20,582,226NCBI
Celera141,371,249 - 1,373,256 (+)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef141,631,329 - 1,633,336 (+)NCBIHuRef
CHM1_11421,512,500 - 21,514,507 (+)NCBICHM1_1
T2T-CHM13v2.01415,239,769 - 15,241,640 (+)NCBIT2T-CHM13v2.0
Rnase7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555501,796,301 - 1,797,801 (+)NCBIChiLan1.0ChiLan1.0
RNASE7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21522,493,933 - 22,495,804 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11421,710,420 - 21,712,291 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0141,857,213 - 1,858,781 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11419,939,117 - 19,941,124 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1419,939,884 - 19,940,354 (+)Ensemblpanpan1.1panPan2
Rnase7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248257,036,229 - 7,036,702 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248257,034,523 - 7,036,967 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 13 1
Below cutoff 10 5 22

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007990715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_007990715   ⟹   XP_007988906
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12921,515,069 - 21,517,963 (+)NCBI
Vero_WHO_p1.0NW_02366605924,918,340 - 24,919,168 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007988906 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000017657
  ENSCSAP00000017657.1
Reference Protein Sequences
RefSeq Acc Id: XP_007988906   ⟸   XM_007990715
- UniProtKB: A0A0D9S9W8 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000000342 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000018193.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.130.10 UniProtKB/TrEMBL
InterPro RNaseA UniProtKB/TrEMBL
  RNaseA-like_dom_sf UniProtKB/TrEMBL
  RNaseA_AS UniProtKB/TrEMBL
  RNaseA_domain UniProtKB/TrEMBL
KEGG Report csab:103231373 UniProtKB/TrEMBL
NCBI Gene RNASE7 ENTREZGENE
PANTHER PTHR11437 UniProtKB/TrEMBL
  RIBONUCLEASE 7 UniProtKB/TrEMBL
Pfam RnaseA UniProtKB/TrEMBL
PRINTS RIBONUCLEASE UniProtKB/TrEMBL
PROSITE RNASE_PANCREATIC UniProtKB/TrEMBL
SMART RNAse_Pc UniProtKB/TrEMBL
Superfamily-SCOP SSF54076 UniProtKB/TrEMBL
UniProt A0A0D9S9W8 ENTREZGENE, UniProtKB/TrEMBL