GDAP1 (ganglioside induced differentiation associated protein 1) - Rat Genome Database

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Gene: GDAP1 (ganglioside induced differentiation associated protein 1) Chlorocebus sabaeus
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Symbol: GDAP1
Name: ganglioside induced differentiation associated protein 1
RGD ID: 18401026
Description: INVOLVED IN cellular response to vitamin D (ortholog); response to retinoic acid (ortholog); PARTICIPATES IN mitochondria fission pathway; ASSOCIATED WITH axonal neuropathy (ortholog); Charcot-Marie-Tooth disease (ortholog); Charcot-Marie-Tooth disease axonal type 2C (ortholog); FOUND IN cytosol (inferred); membrane (inferred); mitochondrial outer membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ganglioside-induced differentiation-associated protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1869,948,800 - 69,965,168 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl869,949,052 - 69,966,421 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603971,407,858 - 71,452,631 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
GDAP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1869,948,800 - 69,965,168 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl869,949,052 - 69,966,421 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603971,407,858 - 71,452,631 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
GDAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38874,350,403 - 74,488,872 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl874,320,613 - 74,518,007 (+)EnsemblGRCh38hg38GRCh38
GRCh37875,262,638 - 75,401,107 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36875,425,173 - 75,441,900 (+)NCBINCBI36Build 36hg18NCBI36
Build 34875,425,251 - 75,439,157NCBI
Celera871,260,475 - 71,277,203 (+)NCBICelera
Cytogenetic Map8q21.11NCBI
HuRef870,753,599 - 70,770,326 (+)NCBIHuRef
CHM1_1875,314,604 - 75,331,330 (+)NCBICHM1_1
T2T-CHM13v2.0874,779,703 - 74,918,431 (+)NCBIT2T-CHM13v2.0
Gdap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39117,202,028 - 17,234,513 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl117,215,586 - 17,234,495 (+)EnsemblGRCm39 Ensembl
GRCm38117,145,373 - 17,164,271 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl117,145,362 - 17,164,271 (+)EnsemblGRCm38mm10GRCm38
MGSCv37117,135,454 - 17,154,352 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36117,130,611 - 17,149,485 (+)NCBIMGSCv36mm8
Celera117,069,144 - 17,087,736 (+)NCBICelera
Cytogenetic Map1A3NCBI
cM Map15.21NCBI
Gdap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr856,715,935 - 6,735,013 (-)NCBIGRCr8
mRatBN7.251,932,613 - 1,951,691 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl51,932,613 - 2,030,061 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx54,048,988 - 4,068,071 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.055,687,862 - 5,706,945 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.055,381,543 - 5,400,606 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.051,328,963 - 1,347,946 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl51,328,913 - 1,347,921 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.051,323,590 - 1,342,573 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.451,006,203 - 1,025,281 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.151,008,936 - 1,025,382 (-)NCBI
Celera51,574,343 - 1,593,421 (-)NCBICelera
Cytogenetic Map5q11NCBI
Gdap1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554446,051,301 - 6,069,765 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554446,053,422 - 6,069,741 (-)NCBIChiLan1.0ChiLan1.0
GDAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2790,064,000 - 90,109,634 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1865,691,783 - 65,820,188 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0870,854,665 - 70,900,532 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1872,528,869 - 72,545,354 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl872,528,869 - 72,545,346 (+)Ensemblpanpan1.1panPan2
GDAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12922,805,468 - 22,835,909 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2922,804,965 - 22,833,069 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2923,070,273 - 23,100,798 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02922,916,906 - 22,947,452 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2922,928,645 - 23,031,398 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12922,976,040 - 23,006,559 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02923,010,785 - 23,041,610 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02923,361,889 - 23,392,422 (+)NCBIUU_Cfam_GSD_1.0
Gdap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530356,448,982 - 56,466,822 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366482,981,546 - 3,014,430 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366482,981,802 - 2,999,161 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GDAP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl461,577,112 - 61,596,049 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1461,577,413 - 61,596,106 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2467,190,455 - 67,209,140 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Gdap1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474416,859,700 - 16,879,057 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474416,859,946 - 16,878,723 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in GDAP1
294 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000011589   ⟹   ENSCSAP00000009656
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl869,949,052 - 69,966,421 (+)Ensembl
RefSeq Acc Id: XM_008000916   ⟹   XP_007999107
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1869,948,934 - 69,965,168 (+)NCBI
Vero_WHO_p1.0NW_02366603971,407,858 - 71,424,009 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008000919   ⟹   XP_007999110
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1869,948,800 - 69,965,168 (+)NCBI
Vero_WHO_p1.0NW_02366603971,407,858 - 71,424,013 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038000377   ⟹   XP_037856305
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603971,407,858 - 71,424,002 (-)NCBI
RefSeq Acc Id: XM_038000378   ⟹   XP_037856306
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603971,407,858 - 71,452,631 (-)NCBI
Protein Sequences
Protein RefSeqs XP_007999107 (Get FASTA)   NCBI Sequence Viewer  
  XP_007999110 (Get FASTA)   NCBI Sequence Viewer  
  XP_037856305 (Get FASTA)   NCBI Sequence Viewer  
  XP_037856306 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000009656
  ENSCSAP00000009656.1
RefSeq Acc Id: XP_007999110   ⟸   XM_008000919
- Peptide Label: isoform X2
RefSeq Acc Id: XP_007999107   ⟸   XM_008000916
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RM17 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000009656   ⟸   ENSCSAT00000011589
RefSeq Acc Id: XP_037856306   ⟸   XM_038000378
- Peptide Label: isoform X3
RefSeq Acc Id: XP_037856305   ⟸   XM_038000377
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000013495 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000011589.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1050.10 UniProtKB/TrEMBL
  Glutaredoxin UniProtKB/TrEMBL
InterPro GDAP1 UniProtKB/TrEMBL
  Glutathione-S-Trfase_C-like UniProtKB/TrEMBL
  Glutathione-S-Trfase_C_sf UniProtKB/TrEMBL
  Glutathione_S-Trfase UniProtKB/TrEMBL
  Glutathione_S-Trfase_N UniProtKB/TrEMBL
  Thioredoxin-like_sf UniProtKB/TrEMBL
KEGG Report csab:103236985 UniProtKB/TrEMBL
NCBI Gene GDAP1 ENTREZGENE
PANTHER GDAP1, ISOFORM A UniProtKB/TrEMBL
  PTHR44188:SF3 UniProtKB/TrEMBL
Pfam GST_C_2 UniProtKB/TrEMBL
  GST_N_3 UniProtKB/TrEMBL
PROSITE GST_CTER UniProtKB/TrEMBL
  GST_NTER UniProtKB/TrEMBL
Superfamily-SCOP SSF47616 UniProtKB/TrEMBL
  SSF52833 UniProtKB/TrEMBL
UniProt A0A0D9RM17 ENTREZGENE, UniProtKB/TrEMBL