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Gene: GBX1 (gastrulation brain homeobox 1) Chlorocebus sabaeus

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Symbol:

GBX1

Name:

gastrulation brain homeobox 1

RGD ID:

18394024

Description:

INVOLVED IN adult walking behavior (ortholog); neuron fate commitment (ortholog); proprioception (ortholog); ASSOCIATED WITH lethal congenital glycogen storage disease of heart (ortholog); long QT syndrome (ortholog); FOUND IN nucleus (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

homeobox protein GBX-1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	119,331,203 - 119,354,622 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666072	15,302,028 - 15,322,785 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

lethal congenital glycogen storage disease of heart (ISO)

long QT syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adult walking behavior (ISO)

neuron fate commitment (ISO)

proprioception (ISO)

sensory neuron axon guidance (ISO)

spinal cord motor neuron differentiation (ISO)

Cellular Component

nucleus (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

GBX1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	119,331,203 - 119,354,622 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666072	15,302,028 - 15,322,785 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

GBX1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	151,148,009 - 151,167,694 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	151,148,009 - 151,174,745 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	150,845,096 - 150,864,781 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	150,476,609 - 150,495,800 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	7	145,403,014 - 145,422,208 (-)	NCBI		Celera
Cytogenetic Map	7	q36.1	NCBI
HuRef	7	144,657,212 - 144,676,250 (-)	NCBI		HuRef
CHM1_1	7	150,854,052 - 150,873,263 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	7	152,321,091 - 152,340,783 (-)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	150,175,196 - 150,194,388 (-)	NCBI

Gbx1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	24,709,424 - 24,731,846 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	24,707,755 - 24,732,200 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	24,504,426 - 24,526,848 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	24,502,757 - 24,527,202 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	24,010,244 - 24,032,666 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	24,014,491 - 24,036,913 (-)	NCBI		MGSCv36	mm8
Celera	5	21,454,400 - 21,476,977 (-)	NCBI		Celera
Cytogenetic Map	5	A3	NCBI
cM Map	5	11.93	NCBI

Gbx1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	11,538,402 - 11,564,931 (+)	NCBI		GRCr8
mRatBN7.2	4	10,645,957 - 10,672,486 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	10,645,957 - 10,672,486 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	15,792,089 - 15,818,580 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	11,612,280 - 11,638,772 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	9,964,062 - 9,990,554 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	7,173,961 - 7,200,752 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	7,173,961 - 7,200,752 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	7,186,479 - 7,212,119 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	6,025,962 - 6,036,534 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	6,036,248 - 6,036,363 (+)	NCBI
Celera	4	6,262,522 - 6,287,235 (+)	NCBI		Celera
Cytogenetic Map	4	q11	NCBI

Gbx1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955491	5,575,836 - 5,592,804 (-)	NCBI	ChiLan1.0	ChiLan1.0

GBX1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	187,566,475 - 187,589,538 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	39,576,740 - 39,599,804 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	142,733,463 - 142,754,447 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	154,887,871 - 154,914,165 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	154,888,479 - 154,907,060 (-)	Ensembl	panpan1.1		panPan2

GBX1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	16	15,195,705 - 15,213,425 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	16	15,803,468 - 15,821,434 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	16	16,917,670 - 16,935,631 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	16	16,918,432 - 16,936,366 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	16	15,289,827 - 15,307,782 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	16	15,871,255 - 15,889,408 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	16	15,922,115 - 15,940,079 (-)	NCBI		UU_Cfam_GSD_1.0

Gbx1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	6,321,299 - 6,339,067 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936527	6,566,306 - 6,582,130 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936527	6,566,306 - 6,582,130 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GBX1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	18	6,058,730 - 6,080,906 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	18	6,058,888 - 6,080,908 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	18	6,422,775 - 6,445,608 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Gbx1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624800	5,464,792 - 5,484,670 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in GBX1
251 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007983495	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000040	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_007983495 ⟹ XP_007981686

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	21	119,331,203 - 119,354,622 (-)	NCBI
Vero_WHO_p1.0	NW_023666072	15,302,028 - 15,322,785 (-)	NCBI

Sequence:

show sequence

GGACTCAAGCAATCCTCCTGCCTCTGCCTCCCAAGTAGCTGGAGCTACAAGTGTGTGCCACCAT
GATTGGCTAATACAATAAGAGGGTCTTTTAACCTTGAGTCCTTGACATACCAGAATGTGACAGG
CTTCTTAAAGTGTCCTTTTATTGAAGGGACTGGTAGAAGAGTGATGTTTCAATATATATCCTTT
TGAGCTTTTGGAATTTGGTACTATGTGATTTTATTACCTATGCAATAAATGAATGCAATTACTT
TTAAAAATGGCTCTTCCTTCATGCCTTACTTGGCTGATCCTGTAACTGCTCATACAGGTTTAAT
TTCAGTTTTGTAGCCCAAAGTTGCCTCAATAATTTGTCAAGTCAATAAGCCTCTGTTATGTATC
CACCACCGATAAGCCCTCTCACTTTAAAAATACAATATACTTTTGAAGCTTGGTCTTCCATGTT
GGTCTGGTAAAGTGCTTGGTTAATTTAGCAAAGGGGTGTTCCGAAGAGTATCTTTAGACAAGTC
CTTTAGTAGTGAGTTGGAGTTAAGCTAAGGCACCTCTTCTTTCTCCATTGCCACATCTTACCAC
CAGACTTGTTTCTTAGAAATTGCACTGGTTGAATGTGGAGCCCAAGGTAGATCAAGACTCCATG
GAAATGACACTCTTCTCTTTTCACCTCTCTGATGACTTGTCAGTTAAGGCATAACCAAAAAAAT
CCTTTCTTGAGTCCTGCCCCCTTCCTCAGTCCACCCTGGTGACAGTGTCTTTGAAGGTACTGAT
TTAAATACATCAGCCTGACATTAACAGTGTTCACTAGGCTAACACAACACTCCTAATTTGGAAC
AAATGTCACTGAGACCCAGAGTTCCCTCCTGCCCTGCTCTGTCTTGGCCGGGCAGTCCTGGAAT
TTGTGTAGGTTTTCATCCTCCCTGGAGCCAAATCACTTCCCCTATCTAGACTGCATCTTCCTAA
ACTTGCCTGGCTTTGCTGTTATTAATTTTAATATTAATTTTAACCAGCTTGGCACTACCTAGCC
TTACCTGAATAACAATTTCCTTGTGACCAGATAACACTCACTGTAGCTGGCCAGCCTTGCCCTG
TGTCCTGAAGCTTGGGTCACTCTTCTGTTGACTTGCCTGTCTTGTCTCTTTCTTGCCCACTAAC
CTGAGGTGGCTATCAAGTCAAAGTGTCTGTGACTTTTGCCTCTAGATTGACAACTCTACCGCTG
GGAATTGGGAGGAGGAGGAGGACGGTAAAAGGCGCCACCATTTCTGTGTCTCAGAAGGGGGGAG
GTGAGAGTCATCTGCAATTAGCGGATAATTAGCGCTACTGACCCTTGGGGCTCATCAGCGCTCC
TGGGGCCAGCCCCCAGCAATCAGCCAGGGCAGGTCGTGAGTGTCAGGCCCAGGAATGAATAGGG
CTCATCAGCGGCGCTGGAGCTGGGGAGCCAATCAGGGAAAATTAATAGCAGAAGAGAGGGAGAG
CGAGCGAGGGAGGGAGACAAGAGATAGACAGACAGACAAGAGATACAGATAAAAGAGAGAAATG
AGAAAAATCGAGTAACAGTGACTGGGATAAGGAACAAGAGATGGGAAAGAAATAATCAGAGAGG
AATAGGAATAGAAACGAGGGCGGGAAAGGGAAGAGGAGTGGGAGGAAGAAAAAGAATGTAAAGG
ATGGGAGAAAGACGGAGGGAAAAGGTCAGAGGAATGGTAAGTACTTGGCATAGTGTGGGCACTC
AAGGAAATTACCCACAGAGGCAAGAGAAAAGGACTAGGGGAAGTTGGAGATGGAGGAGGAGGAG
GGAATGAGGAAGAAGGTGAAGAGCCAATGCCAAGAGAATAGAGACCAGAGGCCAGAGTGCCAAT
GGGGCAGACACGAGGAAAGGGGCCCCATAAGAGTAGCCCTAAGCCATAGCACCGGGCGGGCGCA
GCGCGCCCCCTGTCGGCCCGGCCTCGCCTCCCTCAGCCCCGCGCTCTCGCTGGAGGGGGCGGCG
GCCGTGCTGTCCCGCCAGTCGCGCCCGGGCTTGCTCTGGGGACCGCCACAACGTCCGCTCCACG
GGCGGGGGAGGGGTGTCGGAGCTGGGAGGCACGCCGGGGAATGACTCGCGGCCCGACGGAGGGC
CGCGGCCTGGAGCAGAGGGGAGCTGTGGTCCGGCGCCGCTGCCTGTCCCTGCTGGTGCGCCCTC
TCCGCCTGCCGCCCGGTGTCCCATCCACTCTTGGCCCCGCCGCCCCGTCGGAGTCTGGGCCACC
TCTAGCTTGCCCTCCGAGCCGGGCCGAGCTCGGGCCGGGTGGGCTGAGTTGGGGGTGGACTGAG
TGGAGGGAAGGGGACCGGCCCAGCAGCTGCCGCCGCCTTCTCGTCGGCCGCAAACTTTCACAAA
GCGGCGTGTCCGGCCTCATCAATCTCCATTAATAATAGTTGGTTGGGCCGCGGGGGACGGGTGG
GGGTCCCGGGCCGGCCGGCCAGGCCGCTGGGAACGGGTTCTGCGGAGGGAGCGGGAGCCGGGCG
CGGCGGCGGCGGGCGGAGGGAGGAAGTGAAGCGTAATTTGAGGAAGATGGATGAGTCCGGAGGG
CGACACCCCCAGCCCGCCCGCTCGCCCGCCCCCTCCCTCCTTATGAGAGAGAGGGAGCGCGGCG
CCGGAGCCACACTGCGCCGAGCCCGCGCCCCGCCGCCACCTCGGCCCAGGAGCCAGGAGCGAGC
CCTGCGTGTCCGCGCGGGGCGCCCGAGCCGCGGGGCGCAAGGAGGCACCCGGAGGGGAGCGCCC
CGGGGCGGCCGCAGCACCGAGCAAGATGCAGCGGGCTGGAGGCGGTGGCGCCCCCGGGGGCAAC
GGCGGGAGTGGCGGCGGGGGCCCGGGCACTGCCTTCTCCATCGACTCCCTGATCGGGCCGTCGC
CGCCGCGCTCCGGCCACTTGCTGTACACGGGCTACCCCATGTTCATGCCCTATCGGCCGCTCGT
CCTACCGCAGGCGCTGGCCCCCGCGCCGCTGCCCGCTGGTCTCCCGCCCCTCGCCCCGCTAGCC
TCCTTCGCCGGCCGCCTTACCAACACCTTCTGCGCGGGGCTGGGTCAGGCTGTGCCCTCGATGG
TGGCGCTGACCACCGCGCTGCCCAGCTTCGCGGAGCCGCCCGACGCTTTCTACGGACCCCCAGA
GCTCGCTGCCGCCGCTGCCGCCGCCGCCACTGCCGCCCGAAACAACCCCGAACCAGGCGGCCGA
CGCCCAGAGGGTGGACTGGAAGCCGATGAGCTGCTGCCGGCCCGCGAGAAAGTGGCAGAGCCCC
CACCGCCTCCGCCTCCGCACTTCTCAGAGACTTTTCCAAGTCTGCCCGCAGAGGGGAAGGTGTA
CAGCTCAGATGAGGAGAAGCTGGAGGCACCAGCAGGAGACCCAGCAGGCAGCGAACAGGAGGAA
GAGGGCTCAGGCGGTGACAGCGAGGACGACGGTTTCCTGGACAGTTCTGCAGGGGGCCCAGGGG
CTCTTCTGGGACCTAAACCGAAGCTAAAGGGAAGCCTGGGGACTGGAACTGAGGAGGGGGCACC
GGTGGCAGCAGGGGTCACAGCTCCTGGGGGGAAAAGCCGACGGCGCCGCACAGCATTTACCAGT
GAGCAGCTTTTGGAATTGGAGAAGGAATTTCATTGCAAGAAATACCTGAGCTTGACAGAGCGCT
CTCAGATCGCCCACGCCCTCAAGCTCAGTGAGGTGCAGGTCAAGATCTGGTTTCAGAATCGACG
GGCCAAGTGGAAGCGCATCAAAGCTGGCAATGTGAGCAGCCGTTCTGGGGAGCCCGTAAGAAAC
CCCAAGATTGTTGTCCCCATACCTGTGCATGTCAACAGGTTTGCTGTGCGGAGCCAGCATCAAC
AAATGGAGCAGGGGGCCCGGCCCTGAATGGGCACCCAAGAACTTAGGAAGGCAAGGGATCTGTA
CCTGAGCCTGCTCTGAGACTGTCAGGGTTCTGTGGACCAGAGGGGCTGCAACTGTGATTCTGCC
TTGAGAGGGACTAGTTGGCAATTAACCTAGCCCTGAGTGTGTTCCTTCCAGAACCTGAGATGTG
AGCACTTGGCCCTGAGCCTGTTCCAGAAACCTTCAGGACTAGGGGCTTCAAGGTTAGAGGGGCT
GGGGTTCTAATTGCTGAGGAGCTGTTGAGACTGAGGTGGACTCCTGGGGATGGGGTGGGTTCTA
AGATGCCTAGGGCCTGAAGGTTCTGTGGCGAATGCCCTGGAACAGCTTCTGATGGGTGGAGGGA
TCAGGTGATACCTAGCCAAGGAGATCGCAGCTCCTTATTTATTTGTGTAAATGTGTATATATGG
AGCTATCTGTCTCTGTCCGTCTGTCTGCACCCCTGAGAGGGATTGGAAAAGTTGTTTCCTCAAT
CCTCAGCCAGAGTTCATCTGTCCTACTGCTTTGGGGTAGGCCCCATCTTGCCTCTCTACAAAGA
AATGAAATGGCAACCATCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_007981686	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_007981686 ⟸ XM_007983495

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	GBX1	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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