SLC45A3 (solute carrier family 45 member 3) - Rat Genome Database

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Gene: SLC45A3 (solute carrier family 45 member 3) Chlorocebus sabaeus
Analyze
Symbol: SLC45A3
Name: solute carrier family 45 member 3
RGD ID: 18383174
Description: ENCODES a protein that exhibits carbohydrate transmembrane transporter activity (inferred); sucrose:proton symporter activity (inferred); transmembrane transporter activity (inferred); INVOLVED IN sucrose transport (ortholog); ASSOCIATED WITH autistic disorder (ortholog); COVID-19 (ortholog); familial adult myoclonic epilepsy 5 (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12523,666,388 - 23,689,816 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2523,682,834 - 23,689,928 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605524,362,339 - 24,386,040 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SLC45A3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12523,666,388 - 23,689,816 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2523,682,834 - 23,689,928 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605524,362,339 - 24,386,040 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SLC45A3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381205,657,851 - 205,680,509 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1205,657,851 - 205,680,509 (-)EnsemblGRCh38hg38GRCh38
GRCh371205,626,979 - 205,649,637 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361203,893,604 - 203,916,253 (-)NCBINCBI36Build 36hg18NCBI36
Build 341202,358,635 - 202,381,230NCBI
Celera1178,763,140 - 178,785,789 (-)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1176,791,865 - 176,814,422 (-)NCBIHuRef
CHM1_11207,050,295 - 207,072,937 (-)NCBICHM1_1
T2T-CHM13v2.01204,922,486 - 204,945,157 (-)NCBIT2T-CHM13v2.0
Slc45a3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391131,890,653 - 131,910,710 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1131,890,705 - 131,910,707 (+)EnsemblGRCm39 Ensembl
GRCm381131,962,915 - 131,982,972 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1131,962,967 - 131,982,969 (+)EnsemblGRCm38mm10GRCm38
MGSCv371133,859,544 - 133,879,541 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361133,798,155 - 133,810,510 (+)NCBIMGSCv36mm8
Celera1134,567,359 - 134,587,402 (+)NCBICelera
Cytogenetic Map1E4NCBI
cM Map157.24NCBI
Slc45a3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81345,959,467 - 45,979,763 (+)NCBIGRCr8
mRatBN7.21343,407,293 - 43,427,588 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1343,407,293 - 43,427,588 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1346,010,462 - 46,030,751 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01347,298,608 - 47,318,897 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01344,563,489 - 44,583,761 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01348,745,855 - 48,766,283 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1348,745,860 - 48,766,283 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01353,816,774 - 53,837,091 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41344,840,555 - 44,861,173 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11344,854,660 - 44,873,962 (+)NCBI
Celera1343,744,002 - 43,764,294 (+)NCBICelera
Cytogenetic Map13q13NCBI
Slc45a3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540641,360,380 - 41,382,115 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540641,362,077 - 41,381,981 (-)NCBIChiLan1.0ChiLan1.0
SLC45A3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2143,689,554 - 43,712,220 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1143,654,566 - 43,677,529 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01181,266,533 - 181,289,536 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11185,552,015 - 185,574,391 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1185,552,015 - 185,566,359 (-)Ensemblpanpan1.1panPan2
SLC45A3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1382,110,209 - 2,130,233 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl382,078,008 - 2,125,069 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha382,203,277 - 2,223,174 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0382,107,019 - 2,126,899 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl382,107,022 - 2,126,427 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1382,101,976 - 2,121,437 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0382,493,809 - 2,513,684 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0382,694,065 - 2,713,943 (-)NCBIUU_Cfam_GSD_1.0
Slc45a3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934469,516,900 - 69,536,973 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365576,757,223 - 6,777,087 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365576,757,223 - 6,776,970 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC45A3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl966,344,746 - 66,365,966 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1966,344,742 - 66,365,999 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2972,609,619 - 72,630,915 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Slc45a3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248075,564,545 - 5,583,816 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248075,564,530 - 5,583,638 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 36 18 60
Below cutoff 2

Sequence


RefSeq Acc Id: ENSCSAT00000012747   ⟹   ENSCSAP00000010776
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2523,682,834 - 23,689,928 (+)Ensembl
RefSeq Acc Id: XM_007988720   ⟹   XP_007986911
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12523,666,388 - 23,689,816 (+)NCBI
Vero_WHO_p1.0NW_02366605524,362,339 - 24,386,040 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007988721   ⟹   XP_007986912
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12523,681,767 - 23,689,816 (+)NCBI
Vero_WHO_p1.0NW_02366605524,377,994 - 24,384,682 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037985644   ⟹   XP_037841572
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605524,362,339 - 24,384,682 (+)NCBI
Protein Sequences
Protein RefSeqs XP_007986911 (Get FASTA)   NCBI Sequence Viewer  
  XP_007986912 (Get FASTA)   NCBI Sequence Viewer  
  XP_037841572 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000010776.1
RefSeq Acc Id: XP_007986911   ⟸   XM_007988720
- UniProtKB: A0A0D9RQ87 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007986912   ⟸   XM_007988721
- UniProtKB: A0A0D9RQ87 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000010776   ⟸   ENSCSAT00000012747
RefSeq Acc Id: XP_037841572   ⟸   XM_037985644
- UniProtKB: A0A0D9RQ87 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000014650 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000012747.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/TrEMBL
InterPro MFS UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
KEGG Report csab:103230219 UniProtKB/TrEMBL
NCBI Gene SLC45A3 ENTREZGENE
PANTHER SOLUTE CARRIER FAMILY 45 MEMBER 3 UniProtKB/TrEMBL
  SUGAR TRANSPORTER UniProtKB/TrEMBL
Pfam MFS_1 UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/TrEMBL
UniProt A0A0D9RQ87 ENTREZGENE, UniProtKB/TrEMBL