BRI3BP (BRI3 binding protein) - Rat Genome Database

Name: BRI3BP
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: BRI3BP (BRI3 binding protein) Chlorocebus sabaeus

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Symbol:

BRI3BP

Name:

BRI3 binding protein

RGD ID:

18375565

Description:

FOUND IN mitochondrion (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

BRI3-binding protein; LOC103239356

RGD Orthologs

Alliance Orthologs

More Info

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More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	BRI3BP (BRI3 binding protein)	NCBI	Ortholog
Mus musculus (house mouse):	Bri3bp (Bri3 binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Bri3bp (Bri3 binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Bri3bp (BRI3 binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	BRI3BP (BRI3 binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	BRI3BP (BRI3 binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Bri3bp (BRI3 binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	BRI3BP (BRI3 binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Bri3bp (BRI3 binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	120,351,911 - 120,384,626 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666037	124,895,679 - 124,933,257 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

mitochondrion (ISO)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

BRI3BP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	120,351,911 - 120,384,626 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666037	124,895,679 - 124,933,257 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

BRI3BP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	124,993,645 - 125,051,167 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	124,993,645 - 125,031,231 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	125,478,191 - 125,515,777 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	124,044,147 - 124,076,302 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	124,003,073 - 124,035,229	NCBI
Celera	12	125,079,837 - 125,113,892 (+)	NCBI		Celera
Cytogenetic Map	12	q24.31	NCBI
HuRef	12	122,460,787 - 122,474,086 (+)	NCBI		HuRef
CHM1_1	12	125,299,491 - 125,331,625 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	124,998,843 - 125,059,692 (+)	NCBI		T2T-CHM13v2.0

Bri3bp
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	125,518,632 - 125,537,949 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	125,518,632 - 125,537,434 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	125,441,568 - 125,460,885 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	125,441,568 - 125,460,370 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	125,921,938 - 125,941,255 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	125,730,944 - 125,750,261 (+)	NCBI		MGSCv36	mm8
Celera	5	122,463,614 - 122,482,895 (+)	NCBI		Celera
Cytogenetic Map	5	G1.1	NCBI
cM Map	5	64.21	NCBI

Bri3bp
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	36,838,098 - 36,849,919 (-)	NCBI		GRCr8
mRatBN7.2	12	31,176,742 - 31,188,563 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	31,173,971 - 31,188,572 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	32,347,442 - 32,359,299 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	32,958,867 - 32,970,726 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	32,010,791 - 32,022,648 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	36,576,018 - 36,587,839 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	36,576,020 - 36,587,839 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	38,445,350 - 38,457,171 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	32,270,907 - 32,282,728 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	12	32,871,267 - 32,883,085 (-)	NCBI		Celera
Cytogenetic Map	12	q14	NCBI

Bri3bp
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955482	4,710,937 - 4,716,534 (-)	NCBI	ChiLan1.0	ChiLan1.0

BRI3BP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	133,080,656 - 133,120,590 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	133,077,046 - 133,116,968 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	122,587,345 - 122,627,273 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	126,891,051 - 126,904,267 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

BRI3BP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	4,938,835 - 4,961,552 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	5,093,905 - 5,121,184 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	5,176,412 - 5,203,707 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	5,180,807 - 5,203,707 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	5,114,537 - 5,141,810 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	5,203,968 - 5,231,236 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	5,157,906 - 5,185,163 (-)	NCBI		UU_Cfam_GSD_1.0

Bri3bp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	159,065,004 - 159,091,049 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936558	392,985 - 401,751 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936558	392,685 - 401,569 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

BRI3BP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	28,180,103 - 28,202,072 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	28,180,130 - 28,202,106 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	29,887,796 - 29,904,793 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Bri3bp
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624747	24,078,187 - 24,095,925 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624747	24,078,274 - 24,093,028 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008005187	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037995119	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_037995119 ⟹ XP_037851047

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666037	124,895,679 - 124,933,257 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_037851047	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_037851047 ⟸ XM_037995119

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	BRI3BP	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2022-08-09	BRI3BP	BRI3 binding protein	LOC103239356	BRI3 binding protein	Symbol and/or name change	5135510	APPROVED
2020-12-08	LOC103239356	BRI3 binding protein	BRI3BP	BRI3 binding protein	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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