SURF6 (surfeit 6) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: SURF6 (surfeit 6) Chlorocebus sabaeus
Analyze
Symbol: SURF6
Name: surfeit 6
RGD ID: 18372916
Description: ENCODES a protein that exhibits molecular condensate scaffold activity (ortholog); INVOLVED IN ribosome biogenesis (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 14 (ortholog); Ehlers-Danlos syndrome classic type 1 (ortholog); Leigh disease (ortholog); FOUND IN chromosome (ortholog); granular component (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC103239696; LOC103239697; surfeit locus protein 6; uncharacterized LOC103239696; uncharacterized LOC103239697
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1124,803,231 - 4,804,973 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666058181,666 - 187,771 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SURF6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1124,803,231 - 4,804,973 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666058181,666 - 187,771 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SURF6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389133,328,776 - 133,336,188 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9133,328,776 - 133,336,188 (-)EnsemblGRCh38hg38GRCh38
GRCh379136,195,612 - 136,203,025 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369135,187,373 - 135,192,868 (-)NCBINCBI36Build 36hg18NCBI36
Build 349133,227,106 - 133,232,598NCBI
Celera9106,748,057 - 106,753,551 (-)NCBICelera
Cytogenetic Map9q34.2NCBI
HuRef9105,697,497 - 105,702,999 (-)NCBIHuRef
CHM1_19136,347,741 - 136,353,244 (-)NCBICHM1_1
T2T-CHM13v2.09145,542,703 - 145,550,115 (-)NCBIT2T-CHM13v2.0
Surf6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39226,780,430 - 26,792,899 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl226,778,640 - 26,792,891 (-)EnsemblGRCm39 Ensembl
GRCm38226,890,418 - 26,902,887 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl226,888,628 - 26,902,879 (-)EnsemblGRCm38mm10GRCm38
MGSCv37226,746,292 - 26,758,333 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36226,712,781 - 26,724,829 (-)NCBIMGSCv36mm8
Celera226,600,515 - 26,612,557 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map219.08NCBI
Surf6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8330,619,525 - 30,630,388 (-)NCBIGRCr8
mRatBN7.2310,221,450 - 10,232,306 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl310,221,452 - 10,232,251 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx313,281,440 - 13,292,254 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0321,866,841 - 21,877,655 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0320,122,142 - 20,132,956 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.035,441,404 - 5,452,156 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl35,441,409 - 5,452,156 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0310,803,314 - 10,814,066 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.435,790,323 - 5,801,072 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.135,790,623 - 5,801,372 (-)NCBI
Celera35,019,513 - 5,030,262 (-)NCBICelera
Cytogenetic Map3p13NCBI
Surf6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555132,692,806 - 2,696,481 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555132,691,648 - 2,696,018 (-)NCBIChiLan1.0ChiLan1.0
SURF6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2116,016,970 - 6,024,335 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan196,019,310 - 6,026,671 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09104,453,832 - 104,459,589 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19133,064,755 - 133,070,302 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9133,064,755 - 133,070,302 (-)Ensemblpanpan1.1panPan2
SURF6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1949,769,338 - 49,774,136 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha949,050,875 - 49,055,669 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0950,643,360 - 50,648,222 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl950,642,893 - 50,648,773 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1949,405,912 - 49,410,703 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0949,747,372 - 49,752,154 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0949,825,278 - 49,830,139 (-)NCBIUU_Cfam_GSD_1.0
Surf6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947199,827,029 - 199,831,820 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366693,542,644 - 3,548,762 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366693,543,250 - 3,548,756 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SURF6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1272,949,247 - 272,955,197 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11272,949,236 - 272,955,674 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Surf6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247601,797,740 - 1,804,231 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247601,799,764 - 1,804,194 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_037986965   ⟹   XP_037842893
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666058181,666 - 187,501 (-)NCBI
RefSeq Acc Id: XM_037986966   ⟹   XP_037842894
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666058183,198 - 187,771 (-)NCBI
Protein Sequences
Protein RefSeqs XP_037842893 (Get FASTA)   NCBI Sequence Viewer  
  XP_037842894 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_037842893   ⟸   XM_037986965
- Peptide Label: isoform X1
- UniProtKB: A0A0D9SC18 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037842894   ⟸   XM_037986966
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
NCBI Gene SURF6 ENTREZGENE
UniProt A0A0D9SC18 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-03 SURF6  surfeit 6  LOC103239696  uncharacterized LOC103239696  Data merged from RGD:18397298 737654 PROVISIONAL
2020-12-03 SURF6  surfeit 6  LOC103239697  uncharacterized LOC103239697  Data merged from RGD:18538122 737654 PROVISIONAL