DNHD1 (dynein heavy chain domain 1) - Rat Genome Database

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Gene: DNHD1 (dynein heavy chain domain 1) Chlorocebus sabaeus
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Symbol: DNHD1
Name: dynein heavy chain domain 1
RGD ID: 18370439
Description: ENCODES a protein that exhibits ATP binding (inferred); dynein intermediate chain binding (inferred); dynein light intermediate chain binding (inferred); INVOLVED IN flagellated sperm motility (inferred); microtubule-based movement (inferred); sperm flagellum assembly (inferred); ASSOCIATED WITH Developmental Disabilities (ortholog); essential tremor (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN dynein complex (inferred); inner dynein arm (inferred); sperm flagellum (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: dynein heavy chain domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1158,254,559 - 58,330,856 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl158,254,609 - 58,329,357 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038156,080,345 - 156,156,488 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
DNHD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1158,254,559 - 58,330,856 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl158,254,609 - 58,329,357 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038156,080,345 - 156,156,488 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
DNHD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38116,497,280 - 6,572,020 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl116,497,260 - 6,593,758 (+)EnsemblGRCh38hg38GRCh38
GRCh37116,518,510 - 6,593,250 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36116,543,911 - 6,549,825 (+)NCBINCBI36Build 36hg18NCBI36
Celera116,637,586 - 6,712,323 (+)NCBICelera
Cytogenetic Map11p15.4NCBI
HuRef116,177,598 - 6,252,412 (+)NCBIHuRef
CHM1_1116,517,654 - 6,592,369 (+)NCBICHM1_1
T2T-CHM13v2.0116,555,758 - 6,630,491 (+)NCBIT2T-CHM13v2.0
Dnhd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397105,299,983 - 105,371,007 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7105,300,034 - 105,371,006 (+)EnsemblGRCm39 Ensembl
GRCm387105,650,776 - 105,721,800 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7105,650,827 - 105,721,799 (+)EnsemblGRCm38mm10GRCm38
MGSCv377112,799,341 - 112,854,161 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367105,525,514 - 105,595,620 (+)NCBIMGSCv36mm8
Celera7105,922,116 - 105,993,110 (+)NCBICelera
Cytogenetic Map7E3NCBI
cM Map755.93NCBI
Dnhd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81169,402,615 - 169,486,684 (+)NCBIGRCr8
mRatBN7.21159,990,785 - 160,077,990 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1159,990,438 - 160,074,858 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01170,473,792 - 170,570,220 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1170,471,272 - 170,565,063 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01177,487,073 - 177,576,072 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41163,380,065 - 163,467,261 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1157,923,188 - 158,012,263 (+)NCBICelera
Cytogenetic Map1q32NCBI
Dnhd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541422,231,843 - 22,300,770 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541422,230,887 - 22,300,804 (+)NCBIChiLan1.0ChiLan1.0
DNHD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v298,934,333 - 9,009,134 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1118,898,212 - 8,973,009 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0116,628,568 - 6,703,994 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1116,312,254 - 6,387,032 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl116,312,254 - 6,386,993 (+)Ensemblpanpan1.1panPan2
DNHD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12129,806,731 - 29,886,637 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2129,508,420 - 29,588,482 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02130,632,697 - 30,712,794 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12129,953,546 - 30,033,583 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02130,119,436 - 30,199,226 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02130,314,710 - 30,394,551 (+)NCBIUU_Cfam_GSD_1.0
Dnhd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494756,044,865 - 56,132,664 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936842543,702 - 630,585 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DNHD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.193,177,007 - 3,242,892 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.293,834,047 - 3,901,295 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Dnhd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248178,009,054 - 8,076,609 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008008457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008008459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008008461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008008463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008008467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008008476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008008485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008008494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008008500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008008506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008008511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008008514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008008520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008008527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008008533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008008537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008008546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008008558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008008567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008008574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008008582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008008591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008008600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_500419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC240278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACDXN010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000002358   ⟹   ENSCSAP00000000673
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl158,254,609 - 58,329,357 (-)Ensembl
RefSeq Acc Id: XM_008008467   ⟹   XP_008006658
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1158,254,559 - 58,330,856 (-)NCBI
Vero_WHO_p1.0NW_023666038156,080,345 - 156,156,488 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008006658 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000000673.1
RefSeq Acc Id: XP_008006658   ⟸   XM_008008467
- UniProtKB: A0A0D9QWD4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000000673   ⟸   ENSCSAT00000002358


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000004338 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000002358.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1270.280 UniProtKB/TrEMBL
  1.20.140.100 UniProtKB/TrEMBL
  1.20.58.1120 UniProtKB/TrEMBL
  1.20.920.20 UniProtKB/TrEMBL
  1.20.920.30 UniProtKB/TrEMBL
  3.20.180.20 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro AAA_6 UniProtKB/TrEMBL
  DHC_fam UniProtKB/TrEMBL
  Dynein_2_C UniProtKB/TrEMBL
  Dynein_2_N UniProtKB/TrEMBL
  Dynein_AAA5_ext UniProtKB/TrEMBL
  Dynein_C UniProtKB/TrEMBL
  Dynein_HC_stalk UniProtKB/TrEMBL
  Dynein_heavy_chain_D4_dom UniProtKB/TrEMBL
  Dynein_heavy_D6_P-loop UniProtKB/TrEMBL
  Dynein_heavy_dom-2 UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene DNHD1 ENTREZGENE
PANTHER DYNEIN HEAVY CHAIN DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  PTHR10676 UniProtKB/TrEMBL
Pfam AAA_6 UniProtKB/TrEMBL
  AAA_7 UniProtKB/TrEMBL
  AAA_8 UniProtKB/TrEMBL
  DHC_N2 UniProtKB/TrEMBL
  Dynein_AAA_lid UniProtKB/TrEMBL
  Dynein_C UniProtKB/TrEMBL
  Dynein_heavy UniProtKB/TrEMBL
  PF12777 UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A0D9QWD4 ENTREZGENE, UniProtKB/TrEMBL