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Gene: DCDC2B (doublecortin domain containing 2B) Chlorocebus sabaeus

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Symbol:

DCDC2B

Name:

doublecortin domain containing 2B

RGD ID:

18368717

Description:

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

doublecortin domain-containing protein 2B

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	100,655,929 - 100,662,891 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666033	16,023,568 - 16,030,589 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

DCDC2B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	100,655,929 - 100,662,891 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666033	16,023,568 - 16,030,589 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

DCDC2B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	32,209,089 - 32,216,192 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	32,209,089 - 32,216,192 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	32,674,690 - 32,681,793 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	32,447,282 - 32,454,384 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	30,944,597 - 30,951,699 (+)	NCBI		Celera
Cytogenetic Map	1	p35.2	NCBI
HuRef	1	30,791,148 - 30,798,354 (+)	NCBI		HuRef
CHM1_1	1	32,790,273 - 32,797,374 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	32,066,991 - 32,074,095 (+)	NCBI		T2T-CHM13v2.0

Dcdc2b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	129,501,723 - 129,508,270 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	129,502,124 - 129,508,050 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	129,607,930 - 129,614,483 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	129,608,331 - 129,614,257 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	129,285,575 - 129,291,501 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
Celera	4	127,941,857 - 127,947,761 (-)	NCBI		Celera
Cytogenetic Map	4	D2.2	NCBI
cM Map	4	63.26	NCBI

Dcdc2b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	147,235,365 - 147,241,776 (-)	NCBI		GRCr8
mRatBN7.2	5	141,950,574 - 141,957,476 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	141,951,031 - 141,967,365 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	5	147,812,287 - 147,818,577 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	147,811,986 - 147,817,852 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	151,541,264 - 151,547,576 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	5	140,425,626 - 140,431,915 (-)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

Dcdc2b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955452	10,577,831 - 10,582,775 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955452	10,577,746 - 10,583,087 (+)	NCBI	ChiLan1.0	ChiLan1.0

DCDC2B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	194,611,159 - 194,617,961 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	193,732,583 - 193,739,378 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	31,495,042 - 31,502,095 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	32,505,986 - 32,512,871 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	32,506,060 - 32,512,297 (+)	Ensembl	panpan1.1		panPan2

DCDC2B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	68,991,795 - 68,997,055 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	68,992,179 - 68,996,711 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	65,572,573 - 65,577,852 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	69,558,668 - 69,563,947 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	69,559,078 - 69,563,591 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	66,395,117 - 66,400,393 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	67,390,808 - 67,396,088 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	68,390,176 - 68,395,455 (-)	NCBI		UU_Cfam_GSD_1.0

Dcdc2b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	49,436,112 - 49,443,208 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	15,261,712 - 15,267,738 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	15,261,356 - 15,267,885 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DCDC2B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	88,686,268 - 88,691,866 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	88,685,858 - 88,691,601 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	82,718,233 - 82,724,009 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Dcdc2b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624764	15,450,667 - 15,461,562 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624764	15,438,398 - 15,458,027 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in DCDC2B
93 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007979598	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_007979598 ⟹ XP_007977789

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	20	100,655,929 - 100,662,891 (-)	NCBI
Vero_WHO_p1.0	NW_023666033	16,023,568 - 16,030,589 (+)	NCBI

Sequence:

show sequence

TGCAGTGAGCCAAGATGATGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACATGGTCTCAA
AAAAACAAAACAAATTTGTGGCTAAGGAGTTACCTAGGGGAAGTGGAATGGGAGACCTGTTGGG
AATAAAGGTTTTTCTTAGATTCTGAGCCTGGCTGCTTTCATCTTCTGCTTCTGGCCAGGACAGA
CTCTGGGCCCTGCTGCTCACTTCCTGGTGGCATGGGGCATTGACCCTGGAGCCAGCTGGGAGCC
ATGGCCCAGGAACAGATCTAGCCATCCTCCTTAGGGAACAGCTCCCAAAGCTGATCCCCCATTG
AACTCAGCCTTGTGCTTTAGAGTGGCAAGGAGGCTCTGGAGAGTAAGGTAACACCTATGTTTAA
GTATGATCTCCCCAGGGCAGATTGGATCAAACCCTGAATGCAGATAAATGCTCTTGCCACAGTC
TCCCTCTGCCTTCATGGGTGAGAGGGCAGGACTCCACCTCTGATTGGCAATGTTCCCAGCCCTT
GGTTGCCTGGCAACAGCTCTGTGTCTCTGACTGAGGATACACTATGGCAGGTGGCAGTCCAGCA
GCCAAGAGGGTAGTGGTGTACCGGAATGGAGACCCCTTCTTCCCAGGCTCCCAGCTGGTGGTGA
GTCAACGTCGCTTCCCCACCATGGAGGCTTTCCTCCGCGAGGTGACATCAGCTGTGCAGGCCCC
GCTGGCTGTGCGTGCCCTCTACACACCTTGTCATGGTCACCCTGTCACCAGCCTGGCAGACTTG
AAGAACAGAGGGCAGTATGTGGCCGCTGGATTTGAACGATTCTACAAGCTCCACTATTCACCTC
ATGGAGGGAAGGATCCAGGTGGGAAGAGCTGCAGACTACAAGGTCCTCCCGTGACTCGCCACTT
GTGTGATGGGGCCATTGGACGGTGGCTACCTGCAGGTGCTCCCTGCTATATTCATGTGTTCAGG
AATGGGGACCTGGTAAGTCCCCCATTTAGTCTGAAGCTGTCCCAGGCTGCCAGCCAGGACTGGG
AAACTGTGTTGAAGCTCCTGACTGAGAAGGTCAAGTTGCAGAGTGGGGCTGTGTGCAAACTCTG
CACCCTGGAGGGGCTCCCACTGTCAGCACGGGAGGAGCTGGTAACTGGCCATTACTATGTGGCT
GTCGGAGAGGATGAGTTCAAGGACCTTCCCTATCTGGAGCTGCTGGTGCCCTGCCCCTCCCTGC
CCAGGGGCTGCTGGCGTCCTCCAGGCTCGAAGTGTAGGCCCCACATGCAGGGGGCCCAAGGCCA
CAGGGCCCAGGTAACCCAGTCCTCTCCAAAGGAACCAGACGGAATTAAGCCATCCACTTTCTAT
GCCAGACCCCAGCAGACCATTCAGCCAAGAAGCAAGCTCCCCATACTCTCATTCCCATCAGGAG
TTACAGGAGTATATGGAGCTCCCCACCCAAGGAAGGAGACAGCGGGAGCCCAGGAAGTAGCAGA
TGATGAAGACACCCAGACAGAGGAGCCCTTGGATCAGAGGGCAGCACAGATAGCGGAAGAGGCC
CTGTCCCTGGAAAACCAGCCTGGGGCTGGGGCTGCTATCTCAGCCTCAGCCCCAGCTCTGCCAT
CTTGAGAGCCAGCAGCTCCAGAGGGGAACTGGGGACCACCACTCTGGCCACCTTTTGTCCTCAG
CCTCCAGCAGCTTGTTCCTCAGGAGCCAGCACCTCCCCTGGGCTCACAGGGTACACTGCGGCCT
CCTCAGTCCTCCCAGTTCTCCTGCTCCTAAACCCACAGCCCAGCCTTCCCTTCCTCTGAGCAGA
GCAGCCCTGGCTTGGGGGCTATTTCCTTATGGGATTCTCTAGCCACAGAAAGGAGTAGCTGACT
GAGCCTGGGGGACAGGCTACAAACGGGGGAGCGGGTTTGTCACAATAAAAGAATACTTACTAAC
CTC

hide sequence

Protein Sequences


Protein RefSeqs	XP_007977789	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_007977789 ⟸ XM_007979598

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	DCDC2B	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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