Dcdc2b (doublecortin domain containing 2B) - Rat Genome Database

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Gene: Dcdc2b (doublecortin domain containing 2B) Ictidomys tridecemlineatus
Analyze
Symbol: Dcdc2b
Name: doublecortin domain containing 2B
RGD ID: 12598416
Description: INVOLVED IN intracellular signal transduction (inferred); FOUND IN microtubule (inferred); microtubule organizing center (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: doublecortin domain containing 2B, transcript variant X1; doublecortin domain containing 2B, transcript variant X2; doublecortin domain-containing protein 2B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505849,436,112 - 49,443,208 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647415,261,712 - 15,267,738 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647415,261,356 - 15,267,885 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Dcdc2b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505849,436,112 - 49,443,208 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647415,261,712 - 15,267,738 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647415,261,356 - 15,267,885 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DCDC2B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38132,209,089 - 32,216,192 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl132,209,089 - 32,216,192 (+)EnsemblGRCh38hg38GRCh38
GRCh37132,674,690 - 32,681,793 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36132,447,282 - 32,454,384 (+)NCBINCBI36Build 36hg18NCBI36
Celera130,944,597 - 30,951,699 (+)NCBICelera
Cytogenetic Map1p35.2NCBI
HuRef130,791,148 - 30,798,354 (+)NCBIHuRef
CHM1_1132,790,273 - 32,797,374 (+)NCBICHM1_1
T2T-CHM13v2.0132,066,991 - 32,074,095 (+)NCBIT2T-CHM13v2.0
Dcdc2b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394129,501,723 - 129,508,270 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4129,502,124 - 129,508,050 (-)EnsemblGRCm39 Ensembl
GRCm384129,607,930 - 129,614,483 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4129,608,331 - 129,614,257 (-)EnsemblGRCm38mm10GRCm38
MGSCv374129,285,575 - 129,291,501 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera4127,941,857 - 127,947,761 (-)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map463.26NCBI
Dcdc2b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85147,235,365 - 147,241,776 (-)NCBIGRCr8
mRatBN7.25141,950,574 - 141,957,476 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5141,951,031 - 141,967,365 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.05147,812,287 - 147,818,577 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5147,811,986 - 147,817,852 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05151,541,264 - 151,547,576 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera5140,425,626 - 140,431,915 (-)NCBICelera
Cytogenetic Map5q36NCBI
Dcdc2b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545210,577,831 - 10,582,775 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545210,577,746 - 10,583,087 (+)NCBIChiLan1.0ChiLan1.0
DCDC2B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21194,611,159 - 194,617,961 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11193,732,583 - 193,739,378 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0131,495,042 - 31,502,095 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1132,505,986 - 32,512,871 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl132,506,060 - 32,512,297 (+)Ensemblpanpan1.1panPan2
DCDC2B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1268,991,795 - 68,997,055 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl268,992,179 - 68,996,711 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha265,572,573 - 65,577,852 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0269,558,668 - 69,563,947 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl269,559,078 - 69,563,591 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1266,395,117 - 66,400,393 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0267,390,808 - 67,396,088 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0268,390,176 - 68,395,455 (-)NCBIUU_Cfam_GSD_1.0
DCDC2B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl688,686,268 - 88,691,866 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1688,685,858 - 88,691,601 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2682,718,233 - 82,724,009 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DCDC2B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120100,655,929 - 100,662,891 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603316,023,568 - 16,030,589 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dcdc2b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476415,450,667 - 15,461,562 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476415,438,398 - 15,458,027 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000029467   ⟹   ENSSTOP00000022758
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647415,261,715 - 15,267,694 (+)Ensembl
Ensembl Acc Id: ENSSTOT00000032662   ⟹   ENSSTOP00000029057
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647415,261,712 - 15,267,738 (+)Ensembl
RefSeq Acc Id: XM_005317744   ⟹   XP_005317801
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505849,436,642 - 49,443,208 (+)NCBI
SpeTri2.0NW_00493647415,261,356 - 15,267,885 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021735130   ⟹   XP_021590805
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505849,436,642 - 49,443,208 (+)NCBI
SpeTri2.0NW_00493647415,261,356 - 15,267,885 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040288299   ⟹   XP_040144233
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505849,436,112 - 49,443,208 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005317801 (Get FASTA)   NCBI Sequence Viewer  
  XP_021590805 (Get FASTA)   NCBI Sequence Viewer  
  XP_040144233 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000022758.2
  ENSSTOP00000029057.1
GenBank Protein KAG3282627 (Get FASTA)   NCBI Sequence Viewer  
  KAG3282628 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005317801   ⟸   XM_005317744
- Peptide Label: isoform X3
- UniProtKB: I3NEG1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021590805   ⟸   XM_021735130
- Peptide Label: isoform X1
- UniProtKB: I3NEG1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040144233   ⟸   XM_040288299
- Peptide Label: isoform X2
- UniProtKB: I3NEG1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000029057   ⟸   ENSSTOT00000032662
Ensembl Acc Id: ENSSTOP00000022758   ⟸   ENSSTOT00000029467
Protein Domains
Doublecortin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000022624 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000029467.2 UniProtKB/TrEMBL
  ENSSTOT00000032662.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.20.230 UniProtKB/TrEMBL
InterPro DCX/DCDC2-like UniProtKB/TrEMBL
  Doublecortin_dom UniProtKB/TrEMBL
  Doublecortin_dom_sf UniProtKB/TrEMBL
NCBI Gene Dcdc2b ENTREZGENE
PANTHER DOUBLECORTIN DOMAIN CONTAINING 2 UniProtKB/TrEMBL
  DOUBLECORTIN DOMAIN-CONTAINING PROTEIN 2B UniProtKB/TrEMBL
Pfam DCX UniProtKB/TrEMBL
PROSITE PS50309 UniProtKB/TrEMBL
SMART DCX UniProtKB/TrEMBL
Superfamily-SCOP SSF89837 UniProtKB/TrEMBL
UniProt A0A287D646_ICTTR UniProtKB/TrEMBL
  I3NEG1 ENTREZGENE, UniProtKB/TrEMBL