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Gene: CABS1 (calcium binding protein, spermatid associated 1) Chlorocebus sabaeus

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Symbol:

CABS1

Name:

calcium binding protein, spermatid associated 1

RGD ID:

18367976

Description:

ENCODES a protein that exhibits calcium ion binding (inferred); INVOLVED IN spermatogenesis (ortholog); ASSOCIATED WITH Anaphylaxis (ortholog); Inflammation (ortholog); FOUND IN mitochondrial inner membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

calcium-binding and spermatid-specific protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	18,820,405 - 18,828,746 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	18,821,696 - 18,822,886 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666084	4,096,279 - 4,098,418 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Anaphylaxis (ISO)

Inflammation (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

flagellated sperm motility (IEA)

spermatogenesis (IEA,ISO)

Cellular Component

acrosomal vesicle (IEA)

cytoplasm (IEA)

cytoplasmic vesicle (IEA)

mitochondrial inner membrane (IEA,ISO)

mitochondrion (IEA)

motile cilium (IEA)

sperm principal piece (IEA)

Molecular Function

calcium ion binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

CABS1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	18,820,405 - 18,828,746 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	18,821,696 - 18,822,886 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666084	4,096,279 - 4,098,418 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CABS1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	70,334,981 - 70,337,116 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	70,334,981 - 70,337,116 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	71,200,698 - 71,202,833 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	71,235,260 - 71,237,422 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	4	68,558,418 - 68,560,580 (+)	NCBI		Celera
Cytogenetic Map	4	q13.3	NCBI
HuRef	4	67,002,910 - 67,005,072 (+)	NCBI		HuRef
CHM1_1	4	71,236,753 - 71,238,916 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	4	73,674,478 - 73,676,614 (+)	NCBI		T2T-CHM13v2.0

Cabs1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	88,127,310 - 88,129,400 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	88,127,298 - 88,129,403 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	87,979,451 - 87,981,541 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	87,979,439 - 87,981,544 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	88,408,476 - 88,410,566 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	89,054,012 - 89,056,102 (+)	NCBI		MGSCv36	mm8
MGSCv36	5	87,583,853 - 87,585,943 (+)	NCBI		MGSCv36	mm8
Cytogenetic Map	5	E1	NCBI
cM Map	5	43.56	NCBI

Cabs1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	20,376,214 - 20,378,276 (-)	NCBI		GRCr8
mRatBN7.2	14	20,096,962 - 20,099,024 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	20,096,899 - 20,099,181 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	20,027,466 - 20,029,528 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	21,346,347 - 21,348,409 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	20,077,091 - 20,079,153 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	21,746,294 - 21,748,356 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	21,746,295 - 21,748,356 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	21,656,184 - 21,658,246 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	21,616,284 - 21,618,346 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	21,616,284 - 21,618,034 (-)	NCBI
Celera	14	19,500,272 - 19,502,334 (-)	NCBI		Celera
Cytogenetic Map	14	p22	NCBI

Cabs1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955447	2,581,173 - 2,582,481 (-)	NCBI	ChiLan1.0	ChiLan1.0

CABS1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	59,753,727 - 59,758,566 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	59,950,375 - 59,955,213 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	53,894,739 - 53,896,868 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	60,238,252 - 60,240,418 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	60,239,140 - 60,240,327 (-)	Ensembl	panpan1.1		panPan2

CABS1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	13	59,691,575 - 59,712,204 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	13	59,418,497 - 59,439,174 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	13	60,486,542 - 60,507,218 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	13	60,486,605 - 60,487,795 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	13	60,099,952 - 60,120,613 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	13	59,604,290 - 59,624,969 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	13	60,751,762 - 60,772,442 (+)	NCBI		UU_Cfam_GSD_1.0

Cabs1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	15,881,047 - 15,882,389 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936598	4,333,108 - 4,334,567 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CABS1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	67,161,879 - 67,163,057 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	67,161,203 - 67,163,535 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

Cabs1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624890	1,687,736 - 1,692,993 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
6	5	17	20	20	3	2

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007998783	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007998784	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000052	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000018114 ⟹ ENSCSAP00000017581

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	7	18,821,696 - 18,822,886 (+)	Ensembl

RefSeq Acc Id:

XM_007998783 ⟹ XP_007996974

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	7	18,820,405 - 18,823,782 (+)	NCBI
Vero_WHO_p1.0	NW_023666084	4,096,279 - 4,098,418 (-)	NCBI

Sequence:

show sequence

CCCTATGGTATTCTTTACTGGCCCAGGAACTGATGGTACTTCTGTTCAGAAACATATTTTTACA
GAGAATGATGATATGCCTGCAACCAGGCTAATCATCTAAGACAGAAAGCTGAAAACTTTGAGGT
TGAGTTCATATTTAATAAAGAATAATTATTTGTCCTTGAGATGGAACCCACTATTCAGGCTGAT
GTTGCTGCCCTTTCTCGGATTTAGTTGTATCTGACTATGAAAATTCAATTTCTTCTAACAACAC
TGGAAAAAGACTCATTCTAGCATTAACACTAGGCTGCAATCTGCTTTCATCTAATTAGTTATAT
CTTAAGGTTGACAACACAATGATGATGTTTGACATAATTAACACTATTTTAAAAAATACTCCCT
CCGAAATTGAGAATATAATTCTTAAAAATAATGCAGTTATCCACATCTTGATTCTTGTTTCTGG
GTGAATTTTGACACGTCACACCAGCTTCCTGCCAGTGATAACCCTCCCTGTCTTTTGGGTTAAA
ATAACAGCCTGCAGAAAAACATTCCTAAAATAATGTTAGCCTACAAAACTTGAGACTCTCACTG
TTACTCAAGTAAATTCAAGAAGTCAGAAATACAATGAAAAAGAAAACACTAAAGACCCTAAAAG
GCCAGTAACTATTTGTTATTATCTCTACTGAAAAAGTGGGACTCCCTGTTATGAAGAAGGGAAC
TAACTGAATTCCCTGCTACCTAATTACCTTCATAGCTATACTTTCTGACAAAAACACGATTGAT
TTTTTTAGATACCAATTTTTTAATACTATGAATCTTAAGGGAAAATGGCTTCACCTCAAAAATA
CTCTGTTACTTGCTTGGAAGACAGATGACTTGAAGCTGATGCTGATAAACTTGTGGCTTCCAGA
GTTTTCCTTACTAATACTAAACCCACAAGGTGCCTGGCAGTCTCTGCTATGTCTATTTCAAGTG
ACCCTAACTCCACATCAGGCGACATCTTCCTTATAAACAGCAACATGGTAAATCTTAAGTTCCC
TGCAACTGAAATGCTTGGCTGTGAATTTGATTTCATAATCAGAGCGGATTCTATTGTCTTTTCA
TCCAATATTCCTGCAACTAGATGACCAATCGCAGCCTAGAAACAACTTCCAAGGAGACCCAGTT
ACATTGCCCCCATAGCTGATGCAACAATCACCATGATGACCCAAGCTTTAATCACTCTGATGAA
CACTGCTCTCCTGCCTAGAGATACCACTGAGTCCAGAAGCAAGACCTGTGAGAGTGCACAGTGC
CACTTCGCCCCATGGCTGAAGATGGTTTGCCCAAAATTTATTCTCATCCTCCAACAGAAAGCAG
TAAAACACCAACTGCAGCAACCATTTTCTTTGGGGCTGACAATGCTATTCCCAAATCAGAAACA
ACTATTACTTCAGAAGGAGATCACGTCACTTCAGTAAACGAATATGTGCTAGAAAGCGATTTTT
CAACAACTACAGACAACAAACTGACGCCTACAAAGGAAAAATTCAGATCAGAAGATGATATGGG
GACCGACTTTATTAAGTCAACAACTCACCTACAGAAAGAAATTACCTCTCTGACCGGCACTACA
AACTCCATCACAAGAGACTCTATTACTGAAAATTTCATGACAGTTAAAATTGGGAATATTTCAT
CACCAGTTACTACTGTTTCTTTAATAGATTTTTCCACTGACATAGCAAAAGAAGATATCCTCTT
GGATACCATTGACACAGGAGATGCAGAGATCTTAATAACATCTGAAGTCTCTGGCACACTAAAG
GACAGCAGTGCCGGTGTTGCTGACACTCCTGCCTTTCCACGTATAAAGGATGAAGCTGATATGA
ACAATTATAATTCCTCCATCAAATCCAATGTCCCTGCTGATGAGGCTGTCCAGGTCACTGATTC
CATTATTCCTGAGGCTGAAATCCCTCCTGCTCCTGAAGTAAACTTCACTACTATTCCAGATATA
ACTTCCCTTGAAGAAGAGAAAATAACCAAAATTGACCGAAGTGTTTTAGAGGATGACACCAGTG
CTGTGGCTACATTAACTGACTCTGATGAGGAAAAGTTTATCACTGTGTTTGAACTCACTACCTC
TGCTGAAAAAGTCAAAGATAACCAGGAAGATACTCTGCTAACTGATGAAGAATCTCCTGAGGGA
GCCAATATTTGGATGGAGAGAGAGACTGCAAATGAAGCAGAGACCCATTCTGTTTTGCTTACTG
CTGTTGAATCCAGATATGACTTCGTTGTCCCTGCATCAATAGCTACAAACCTAGTGGGAGACTC
ATCTACAGAAGAAGAGTTGTCTGAAACTGATAGAACAGAGACTGTACCTAAGATCACTGAGCCA
TTTTCTGGAACTAGCTCTGTATTAGATACCCCAGACTATAAGGAAGACACCTCCACAACTGAAA
CAGATATCTTTGAACTACTGAAAGAAGAACCAGATGAGTTCATGATTTGAAAGCAGCAAAAGGG
ATACCACGTAAAATTGTGCAATAGCCTAGCCAGCTAGCCTTAACATCTAAGAAGTTTTTCCAAC
AAGCAAAAACCTTTAGAAATGAAAGAATGTGGGCATTTAAGGTCTTAAAACACTGAATATCACA
CTCTTCTTATGATTCTTGCTAGCGATTCAAGGACATAAATCTTCATTCTTTTGTAGCACAGACT
ACTTAAATGGGTCTGTTTTCACTTTGCTCATTTCTCTTCAATAAATCTTTTTGGCAAGCAACTG
A

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Protein Sequences


Protein RefSeqs	XP_007996974	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000017581.1

RefSeq Acc Id:	XP_007996974 ⟸ XM_007998783
- UniProtKB:	A0A0D9S9P2 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCSAP00000017581 ⟸ ENSCSAT00000018114

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000000421	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000018114.1	UniProtKB/TrEMBL
InterPro	Ca-bd_spermatid	UniProtKB/TrEMBL
KEGG Report	csab:103235739	UniProtKB/TrEMBL
NCBI Gene	CABS1	ENTREZGENE
PANTHER	CALCIUM-BINDING AND SPERMATID-SPECIFIC PROTEIN 1	UniProtKB/TrEMBL
	PTHR22810	UniProtKB/TrEMBL
Pfam	CABS1	UniProtKB/TrEMBL
UniProt	A0A0D9S9P2	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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