NPB (neuropeptide B) - Rat Genome Database

Name: NPB
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: NPB (neuropeptide B) Chlorocebus sabaeus

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Symbol:

NPB

Name:

neuropeptide B

RGD ID:

18367690

Description:

ENCODES a protein that exhibits G protein-coupled receptor binding (ortholog); INVOLVED IN feeding behavior (inferred); G protein-coupled receptor signaling pathway (inferred); neuropeptide signaling pathway (inferred); ASSOCIATED WITH polycystic ovary syndrome (ortholog); FOUND IN extracellular region (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

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More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NPB (neuropeptide B)	NCBI	Ortholog
Mus musculus (house mouse):	Npb (neuropeptide B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Npb (neuropeptide B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Npb (neuropeptide B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	NPB (neuropeptide B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	NPB (neuropeptide B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Npb (neuropeptide B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NPB (neuropeptide B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Npb (neuropeptide B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	73,774,767 - 73,776,311 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	73,775,695 - 73,776,149 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	45,227,843 - 45,228,334 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

polycystic ovary syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

feeding behavior (IEA)

G protein-coupled receptor signaling pathway (IEA)

neuropeptide signaling pathway (IEA)

Cellular Component

extracellular region (IEA)

Molecular Function

G protein-coupled receptor binding (IEA,ISO)

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

NPB
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	73,774,767 - 73,776,311 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	73,775,695 - 73,776,149 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	45,227,843 - 45,228,334 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

NPB
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	81,902,238 - 81,902,905 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	81,900,745 - 81,902,905 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	79,860,114 - 79,860,781 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	77,453,446 - 77,453,916 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	17	76,464,079 - 76,464,788 (+)	NCBI		Celera
Cytogenetic Map	17	q25.3	NCBI
HuRef	17	75,261,752 - 75,262,461 (+)	NCBI		HuRef
CHM1_1	17	79,946,276 - 79,946,985 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	82,769,398 - 82,770,065 (+)	NCBI		T2T-CHM13v2.0

Npb
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	120,499,303 - 120,499,926 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	120,499,303 - 120,499,919 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	120,608,477 - 120,609,100 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	120,608,477 - 120,609,093 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	120,469,791 - 120,470,414 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	120,424,599 - 120,425,033 (+)	NCBI		MGSCv36	mm8
Celera	11	132,343,769 - 132,344,392 (+)	NCBI		Celera
Cytogenetic Map	11	E2	NCBI
cM Map	11	84.33	NCBI

Npb
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	106,382,307 - 106,385,566 (+)	NCBI		GRCr8
mRatBN7.2	10	105,883,992 - 105,887,689 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	105,874,708 - 105,887,254 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	110,990,498 - 110,990,932 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	110,453,526 - 110,453,960 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	105,807,106 - 105,807,540 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	109,786,222 - 109,786,656 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	109,786,222 - 109,786,656 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	109,377,548 - 109,380,249 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	109,999,845 - 110,000,279 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	110,014,348 - 110,014,783 (+)	NCBI
Celera	10	104,430,057 - 104,430,491 (+)	NCBI		Celera
Cytogenetic Map	10	q32.3	NCBI

Npb
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955506	1,268,371 - 1,268,775 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955506	1,268,216 - 1,268,964 (-)	NCBI	ChiLan1.0	ChiLan1.0

NPB
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	98,436,500 - 98,438,984 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	103,337,273 - 103,340,957 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	76,306,883 - 76,308,470 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

NPB
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	390,493 - 392,339 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	391,781 - 392,314 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	993,780 - 994,469 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	984,997 - 985,686 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	985,098 - 985,686 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	1,010,145 - 1,010,834 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	1,136,741 - 1,137,430 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	1,215,405 - 1,216,094 (-)	NCBI		UU_Cfam_GSD_1.0

Npb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	1,001,978 - 1,002,817 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936594	5,409,354 - 5,409,815 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936594	5,408,560 - 5,410,870 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NPB
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	1,092,653 - 1,093,202 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	1,092,643 - 1,093,361 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

Npb
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624801	10,744,413 - 10,744,811 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624801	10,742,517 - 10,744,972 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
69	35	18	33	33	54	20

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008013287	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000045	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000000232 ⟹ ENSCSAP00000015821

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	16	73,775,695 - 73,776,149 (+)	Ensembl

RefSeq Acc Id:

XM_008013287 ⟹ XP_008011478

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	16	73,774,767 - 73,776,311 (+)	NCBI
Vero_WHO_p1.0	NW_023666077	45,227,843 - 45,228,334 (+)	NCBI

Sequence:

show sequence

ACACCCTCATGGACCCAGCAGGGACAATACTTTGCATCCTTTGATCCCATCAAAATAACCCTCA
GTATTCACCATCACACCTGGGAAGCACGGAACCCAGAAACAAGTACCAGGGCTCCAGTGCCAGT
GCCTGTCCTGGCGAGATATCCAAAAGAAGACGTGACCAGGACCTTGGGGGAGCATGAAATGGTG
AGGGCACAGTGAGCCTGAAGGCGGATGTCACCTGCCAAGAGAGCGGCTCGCAGTCCTGCCTGGT
GCCCTTCCAGGGGCAGAGCTGGCAGAGAGGGGCCTCCAGGAATCGTGGAGCCCCAGTGCCTTGG
TGTGGCTTTCCTGAGGTCAGTGCCTGACCTTCTTGCCCCGCTCCCAGAGCACCCTGTCAGTAGC
AGCCCTGCTGGTGGAACCTTCCCCGAAGGGCGTGAAAGAAATGAGGGCCCCACAAACCACATGG
ACTCTGATGCCTGGAGCCAAGAATACGCCTCAGGGTGGGAAAAACCGCCCCCTGGGCACTGTGC
AGTGTGGCTGGCTCTCCCGCCTCAGGAGTACTGGGGACTTCCTGGGGGACGACTCCTAGGGCTG
AGCGCCCGTGGGCCCTCCCCTGCTCCCACTGAGGCTCACGCAGGCCGGGCCTGAAGGATGCGAG
CGGCGTGGGTGGGGAGCTTGGGGCGTCGGGCTCCGACCAAGCGCCAGATCCCTGCGCGCCTCCA
GCGCTCACCCGCGCGGCTGGGTCCTCTGGGATGCGCAGGTGCGACGGGTCCTCCGCGCGGGCTG
GCTGCACCCCCAGCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCTCCCGGCC
CCCCGCAGCCTCGGCCCGCCCCCGCCGCAGATATAAGGCGGCCCAGGCGGTGGCTGCTCCGAGC
CCCGACGCCGCCGCCCGCCCGCCCGCGTCCCCATGGCCCGGCCCGCGACACTGGTGGCCGCCGC
CCTGGCGCTGTGCCTGCTGCTGGCGCCGCCCGGCCTCGCGTGGTACAAGCCGGCGGCGGGGCGC
AGCTCCTACTCCGTGGGCCGCGCCGCGGGGCTGCTGTCCGGCTTCCGCAGGTCCCCGTACGCGC
GGCGCTCCCAGCCCCACAGACGGGCGGAACCCCCGGGCCGGGCCGGCGCCTCCCCGGAGCTGCA
GCTGCACCCCAGACTGCGGAGCCTCGCCGTGTGCATCCAGGACGTCGCTCCAAACCTGCAGAGG
TGCGAGCGGCTGCCCGACGACCGCGGGACCTTCCAGTGCAAGGCGGACGTCTTCCTGTCCCTGC
GCTCAGCCGACTGCCGCGCCCCCTGAGCCCGGAACCCGGACCTCTCCTGGCACTGCTGGGGACC
CCCGCCACCATCGTCCTACTGGGGGACCCCAGGCCCCGCCGGCTGGGGATGGCGCCCCAGCTCT
CCCCTATTCCGCCCACCCCGCAGTTCATGGTAAACAAATAAATAGTGAGGCAGCCTCGGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_008011478	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000015821.1

RefSeq Acc Id:	XP_008011478 ⟸ XM_008013287
- UniProtKB:	A0A0D9S4N2 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCSAP00000015821 ⟸ ENSCSAT00000000232

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000002213	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000000232.1	UniProtKB/TrEMBL
InterPro	Neuropept_B_pre	UniProtKB/TrEMBL
	Neuropept_BW_pre	UniProtKB/TrEMBL
KEGG Report	csab:103243738	UniProtKB/TrEMBL
NCBI Gene	NPB	ENTREZGENE
PANTHER	NEUROPEPTIDE B	UniProtKB/TrEMBL
	PTHR28553	UniProtKB/TrEMBL
Pfam	NPBW	UniProtKB/TrEMBL
PRINTS	NROPEPTIDEBW	UniProtKB/TrEMBL
	PPNRPEPTIDEB	UniProtKB/TrEMBL
UniProt	A0A0D9S4N2	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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