ERGIC1 (endoplasmic reticulum-golgi intermediate compartment 1) - Rat Genome Database

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Gene: ERGIC1 (endoplasmic reticulum-golgi intermediate compartment 1) Chlorocebus sabaeus
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Symbol: ERGIC1
Name: endoplasmic reticulum-golgi intermediate compartment 1
RGD ID: 18350351
Description: INVOLVED IN endoplasmic reticulum to Golgi vesicle-mediated transport (inferred); intracellular transport (inferred); retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum (inferred); ASSOCIATED WITH arthrogryposis multiplex congenita (ortholog); atrial heart septal defect 7 (ortholog); Atrial Septal Defect with Atrioventricular Conduction Defects (ortholog); FOUND IN COPII-coated ER to Golgi transport vesicle (inferred); endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: endoplasmic reticulum-Golgi intermediate compartment protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12375,001,203 - 75,121,583 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2375,056,015 - 75,119,704 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660343,490,565 - 3,611,216 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ERGIC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12375,001,203 - 75,121,583 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2375,056,015 - 75,119,704 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660343,490,565 - 3,611,216 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ERGIC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385172,834,251 - 172,952,683 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5172,834,251 - 172,952,792 (+)EnsemblGRCh38hg38GRCh38
GRCh375172,261,254 - 172,379,686 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365172,193,947 - 172,312,292 (+)NCBINCBI36Build 36hg18NCBI36
Celera5168,294,145 - 168,412,842 (+)NCBICelera
Cytogenetic Map5q35.1NCBI
HuRef5167,356,628 - 167,474,936 (+)NCBIHuRef
CHM1_15171,693,810 - 171,812,411 (+)NCBICHM1_1
T2T-CHM13v2.05173,374,397 - 173,492,729 (+)NCBIT2T-CHM13v2.0
Ergic1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391726,779,736 - 26,875,908 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1726,780,463 - 26,875,908 (+)EnsemblGRCm39 Ensembl
GRCm381726,560,762 - 26,656,934 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1726,561,489 - 26,656,934 (+)EnsemblGRCm38mm10GRCm38
MGSCv371726,698,457 - 26,793,879 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361726,289,112 - 26,384,534 (+)NCBIMGSCv36mm8
Celera1727,095,127 - 27,193,240 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1713.34NCBI
Ergic1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81017,035,615 - 17,131,411 (-)NCBIGRCr8
mRatBN7.21016,531,192 - 16,626,974 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1016,531,194 - 16,626,957 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1021,281,024 - 21,376,823 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01020,769,590 - 20,865,403 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01016,259,345 - 16,355,279 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01016,821,393 - 16,912,050 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1016,821,880 - 16,910,641 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01016,717,726 - 16,814,027 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41016,793,908 - 16,900,287 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1016,184,053 - 16,280,043 (-)NCBICelera
Cytogenetic Map10q12NCBI
Ergic1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540825,540,013 - 25,645,503 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540825,540,149 - 25,644,108 (+)NCBIChiLan1.0ChiLan1.0
ERGIC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24167,973,259 - 168,091,228 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15166,112,803 - 166,230,770 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05168,187,760 - 168,305,675 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15175,098,246 - 175,215,920 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5175,098,246 - 175,215,920 (+)Ensemblpanpan1.1panPan2
ERGIC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1439,434,631 - 39,539,885 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl439,418,518 - 39,540,379 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha439,379,470 - 39,484,736 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0439,805,098 - 39,910,265 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl439,786,076 - 39,910,354 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1439,621,873 - 39,727,039 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0439,811,496 - 39,916,703 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0440,321,077 - 40,426,511 (-)NCBIUU_Cfam_GSD_1.0
Ergic1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721393,848,819 - 93,899,412 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366092,571,501 - 2,615,313 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366092,571,498 - 2,615,313 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ERGIC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1651,285,493 - 51,330,169 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11651,283,763 - 51,403,513 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21655,597,260 - 55,713,914 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Ergic1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473317,092,746 - 17,196,607 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473317,092,848 - 17,196,602 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ERGIC1
3734 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000007640   ⟹   ENSCSAP00000005816
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2375,056,015 - 75,119,704 (+)Ensembl
RefSeq Acc Id: XM_008015305   ⟹   XP_008013496
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12375,034,940 - 75,119,889 (+)NCBI
Vero_WHO_p1.0NW_0236660343,490,565 - 3,577,486 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008015307   ⟹   XP_008013498
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12375,001,203 - 75,121,583 (+)NCBI
Vero_WHO_p1.0NW_0236660343,490,565 - 3,611,216 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008013496 (Get FASTA)   NCBI Sequence Viewer  
  XP_008013498 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000005816
  ENSCSAP00000005816.1
RefSeq Acc Id: XP_008013498   ⟸   XM_008015307
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RB27 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008013496   ⟸   XM_008015305
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RB27 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000005816   ⟸   ENSCSAT00000007640


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000009579 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000007640.1 UniProtKB/TrEMBL
InterPro Erv UniProtKB/TrEMBL
  Erv_C UniProtKB/TrEMBL
  Erv_N UniProtKB/TrEMBL
NCBI Gene ERGIC1 ENTREZGENE
PANTHER ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN 1 UniProtKB/TrEMBL
  PTHR10984 UniProtKB/TrEMBL
Pfam COPIIcoated_ERV UniProtKB/TrEMBL
  ERGIC_N UniProtKB/TrEMBL
UniProt A0A0D9RB27 ENTREZGENE, UniProtKB/TrEMBL