SYNGR1 (synaptogyrin 1) - Rat Genome Database

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Gene: SYNGR1 (synaptogyrin 1) Chlorocebus sabaeus
Analyze
Symbol: SYNGR1
Name: synaptogyrin 1
RGD ID: 18338884
Description: INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); protein targeting (ortholog); regulated exocytosis (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); adenylosuccinase lyase deficiency (ortholog); prostate cancer (ortholog); FOUND IN Schaffer collateral - CA1 synapse (ortholog); synaptic vesicle (ortholog); synaptic vesicle membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: synaptogyrin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11921,924,110 - 21,957,453 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1921,924,174 - 21,953,808 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045103,754,101 - 103,787,818 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SYNGR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11921,924,110 - 21,957,453 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1921,924,174 - 21,953,808 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045103,754,101 - 103,787,818 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SYNGR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382239,349,991 - 39,385,575 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2239,349,925 - 39,385,575 (+)EnsemblGRCh38hg38GRCh38
GRCh372239,745,996 - 39,781,580 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362238,075,900 - 38,111,539 (+)NCBINCBI36Build 36hg18NCBI36
Build 342238,084,674 - 38,098,416NCBI
Celera2223,548,079 - 23,583,649 (+)NCBICelera
Cytogenetic Map22q13.1NCBI
HuRef2222,711,359 - 22,746,314 (+)NCBIHuRef
CHM1_12239,704,705 - 39,740,329 (+)NCBICHM1_1
T2T-CHM13v2.02239,820,668 - 39,856,199 (+)NCBIT2T-CHM13v2.0
Syngr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391579,975,537 - 80,003,702 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1579,975,535 - 80,003,702 (+)EnsemblGRCm39 Ensembl
GRCm381580,091,334 - 80,119,501 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1580,091,334 - 80,119,501 (+)EnsemblGRCm38mm10GRCm38
MGSCv371579,921,764 - 79,949,931 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361579,918,589 - 79,946,756 (+)NCBIMGSCv36mm8
Celera1582,206,770 - 82,234,933 (+)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1537.85NCBI
Syngr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87113,516,246 - 113,542,918 (+)NCBIGRCr8
mRatBN7.27111,635,911 - 111,659,341 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7111,635,918 - 111,659,341 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7113,390,379 - 113,413,774 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07115,613,927 - 115,637,322 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07115,583,281 - 115,606,676 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07121,311,008 - 121,334,437 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7121,311,024 - 121,334,437 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07121,301,097 - 121,324,532 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47118,328,188 - 118,351,610 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17118,362,451 - 118,385,840 (+)NCBI
Celera7107,964,201 - 107,987,641 (+)NCBICelera
Cytogenetic Map7q34NCBI
Syngr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541325,244,647 - 25,269,725 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541325,244,679 - 25,269,725 (+)NCBIChiLan1.0ChiLan1.0
SYNGR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22349,194,897 - 49,230,462 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12251,886,298 - 51,921,972 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02220,253,936 - 20,289,470 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12238,071,914 - 38,108,599 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2238,071,261 - 38,104,931 (+)Ensemblpanpan1.1panPan2
SYNGR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11025,685,079 - 25,735,940 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1025,687,633 - 25,713,300 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1025,620,643 - 25,648,278 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01026,436,724 - 26,464,409 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1026,442,572 - 26,464,419 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11026,151,250 - 26,178,921 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01026,470,448 - 26,498,089 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01026,646,256 - 26,673,914 (-)NCBIUU_Cfam_GSD_1.0
Syngr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049459,243,284 - 9,267,070 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364922,253,705 - 2,262,151 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364922,253,703 - 2,262,040 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYNGR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl58,870,645 - 8,902,270 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.158,870,641 - 8,902,267 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.256,168,731 - 6,174,529 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Syngr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247528,954,159 - 8,990,789 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247528,954,164 - 8,990,117 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000004395   ⟹   ENSCSAP00000002650
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1921,924,174 - 21,953,808 (+)Ensembl
RefSeq Acc Id: XM_007975829   ⟹   XP_007974020
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11921,924,110 - 21,957,453 (+)NCBI
Vero_WHO_p1.0NW_023666045103,754,101 - 103,787,799 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007975830   ⟹   XP_007974021
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11921,924,110 - 21,954,223 (+)NCBI
Vero_WHO_p1.0NW_023666045103,754,101 - 103,787,799 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007975831   ⟹   XP_007974022
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11921,924,110 - 21,951,933 (+)NCBI
Vero_WHO_p1.0NW_023666045103,759,623 - 103,787,799 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007975832   ⟹   XP_007974023
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11921,924,115 - 21,949,799 (+)NCBI
Vero_WHO_p1.0NW_023666045103,761,286 - 103,787,818 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007974020 (Get FASTA)   NCBI Sequence Viewer  
  XP_007974021 (Get FASTA)   NCBI Sequence Viewer  
  XP_007974022 (Get FASTA)   NCBI Sequence Viewer  
  XP_007974023 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000002650
  ENSCSAP00000002650.1
RefSeq Acc Id: XP_007974020   ⟸   XM_007975829
- Peptide Label: isoform X1
- UniProtKB: A0A0D9R211 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007974021   ⟸   XM_007975830
- Peptide Label: isoform X2
RefSeq Acc Id: XP_007974022   ⟸   XM_007975831
- Peptide Label: isoform X3
RefSeq Acc Id: XP_007974023   ⟸   XM_007975832
- Peptide Label: isoform X4
Ensembl Acc Id: ENSCSAP00000002650   ⟸   ENSCSAT00000004395


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000006356 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000004395.1 UniProtKB/TrEMBL
InterPro Marvel UniProtKB/TrEMBL
  Synaptogyrin UniProtKB/TrEMBL
KEGG Report csab:103223340 UniProtKB/TrEMBL
NCBI Gene SYNGR1 ENTREZGENE
PANTHER PTHR10838 UniProtKB/TrEMBL
  SYNAPTOGYRIN-1 UniProtKB/TrEMBL
Pfam MARVEL UniProtKB/TrEMBL
PIRSF Synaptogyrin UniProtKB/TrEMBL
PROSITE MARVEL UniProtKB/TrEMBL
UniProt A0A0D9R211 ENTREZGENE, UniProtKB/TrEMBL