AC016182.1 (Ran-specific GTPase-activating protein pseudogene) - Rat Genome Database

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Gene: AC016182.1 (Ran-specific GTPase-activating protein pseudogene) Homo sapiens
Analyze
Symbol: AC016182.1
Name: Ran-specific GTPase-activating protein pseudogene
RGD ID: 16564835
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: LOC100419624; RAN binding protein 1 pseudogene
Related Functional Gene: RANBP1  
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381778,522,159 - 78,522,870 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1778,522,247 - 78,522,828 (+)EnsemblGRCh38hg38GRCh38
GRCh371776,518,241 - 76,518,952 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map17q25.3NCBI
HuRef1771,940,729 - 71,941,310 (+)NCBIHuRef
CHM1_11776,582,243 - 76,582,824 (+)NCBICHM1_1
T2T-CHM13v2.01779,416,442 - 79,417,153 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1476
Count of miRNA genes:851
Interacting mature miRNAs:994
Transcripts:ENST00000587621, ENST00000598378
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 2 2 23 4 4 14
Below cutoff 79 120 59 14 75 7 425 66 128 7 162 97 8 62 251

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000587621
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1778,522,247 - 78,522,828 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC016182.1 COSMIC
Ensembl Genes ENSG00000267770 Ensembl, ENTREZGENE
GTEx ENSG00000267770 GTEx
Human Proteome Map AC016182.1 Human Proteome Map
NCBI Gene LOC100419624 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-25 AC016182.1  Ran-specific GTPase-activating protein pseudogene  LOC100419624  RAN binding protein 1 pseudogene  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 LOC100419624  RAN binding protein 1 pseudogene  AC016182.1  Ran-specific GTPase-activating protein pseudogene  Symbol and/or name change 5135510 APPROVED