AL136084.1 (novel transcript, antisense to GALNT12)

Gene: AL136084.1 (novel transcript, antisense to GALNT12) Homo sapiens

Analyze

Symbol:

AL136084.1

Name:

novel transcript, antisense to GALNT12

RGD ID:

16564397

Description:

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

MODEL

Previously known as:

AL136084.2; LOC102724684; uncharacterized LOC102724684

Latest Assembly:

GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	98,868,988 - 98,877,333 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	98,847,172 - 98,872,415 (-)	Ensembl	GRCh38		hg38	GRCh38
Cytogenetic Map	9	q22.33	NCBI
CHM1_1	9	101,777,720 - 101,786,062 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	111,040,687 - 111,049,032 (-)	NCBI		T2T-CHM13v2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Genomics

Variants

Variants in AL136084.1
3 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	2874
Count of miRNA genes:	832
Interacting mature miRNAs:	986
Transcripts:	ENST00000433997, ENST00000585610, ENST00000585704, ENST00000586750, ENST00000586979, ENST00000587726, ENST00000588535, ENST00000589059, ENST00000589105, ENST00000589257, ENST00000589430, ENST00000589976, ENST00000590015, ENST00000590660, ENST00000590999, ENST00000591184, ENST00000592309, ENST00000592627
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system

circulatory system

endocrine system

exocrine system

hemolymphoid system

hepatobiliary system

integumental system

musculoskeletal system

nervous system

renal system

reproductive system

respiratory system

sensory system

adipose tissue

appendage

entire extraembryonic component

High

Medium

Low

146

271

359

Below cutoff

2175

1663

1228

232

812

3297

1456

2522

206

803

1317

151

1127

2045

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_007079791	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_007079792	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_007079793	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_428583	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_930167	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_930168	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AL136084	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CP068269	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENST00000433997

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	9	98,847,229 - 98,872,278 (-)	Ensembl

RefSeq Acc Id:

ENST00000585610

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	9	98,868,991 - 98,872,263 (-)	Ensembl

RefSeq Acc Id:

ENST00000585704

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	9	98,868,995 - 98,872,415 (-)	Ensembl

RefSeq Acc Id:

ENST00000586750

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	9	98,869,062 - 98,872,263 (-)	Ensembl

RefSeq Acc Id:

ENST00000586979

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	9	98,869,067 - 98,872,263 (-)	Ensembl

RefSeq Acc Id:

ENST00000587726

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	9	98,869,002 - 98,872,415 (-)	Ensembl

RefSeq Acc Id:

ENST00000588535

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	9	98,869,382 - 98,872,262 (-)	Ensembl

RefSeq Acc Id:

ENST00000589059

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	9	98,869,115 - 98,872,263 (-)	Ensembl

RefSeq Acc Id:

ENST00000589105

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	9	98,870,114 - 98,872,415 (-)	Ensembl

RefSeq Acc Id:

ENST00000589257

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	9	98,847,393 - 98,849,613 (-)	Ensembl

RefSeq Acc Id:

ENST00000589430

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	9	98,870,349 - 98,872,263 (-)	Ensembl

RefSeq Acc Id:

ENST00000589976

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	9	98,868,991 - 98,872,415 (-)	Ensembl

RefSeq Acc Id:

ENST00000590015

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	9	98,862,239 - 98,872,263 (-)	Ensembl

RefSeq Acc Id:

ENST00000590660

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	9	98,868,991 - 98,872,263 (-)	Ensembl

RefSeq Acc Id:

ENST00000590999

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	9	98,869,241 - 98,872,263 (-)	Ensembl

RefSeq Acc Id:

ENST00000591184

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	9	98,868,991 - 98,872,263 (-)	Ensembl

RefSeq Acc Id:

ENST00000592309

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	9	98,869,165 - 98,872,263 (-)	Ensembl

RefSeq Acc Id:

ENST00000592627

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	9	98,869,337 - 98,872,260 (-)	Ensembl

RefSeq Acc Id:

ENST00000627925

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	9	98,864,444 - 98,872,263 (-)	Ensembl

RefSeq Acc Id:

ENST00000628879

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	9	98,854,193 - 98,872,263 (-)	Ensembl

RefSeq Acc Id:

ENST00000629238

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	9	98,847,172 - 98,872,257 (-)	Ensembl

RefSeq Acc Id:

ENST00000629611

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	9	98,859,572 - 98,872,263 (-)	Ensembl

RefSeq Acc Id:

ENST00000630758

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	9	98,847,231 - 98,872,403 (-)	Ensembl

RefSeq Acc Id:

XR_007079791

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
T2T-CHM13v2.0	9	111,040,687 - 111,044,132 (-)	NCBI

RefSeq Acc Id:

XR_007079792

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
T2T-CHM13v2.0	9	111,040,687 - 111,044,132 (-)	NCBI

RefSeq Acc Id:

XR_007079793

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
T2T-CHM13v2.0	9	111,040,687 - 111,049,032 (-)	NCBI

RefSeq Acc Id:

XR_428583

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	9	98,868,988 - 98,872,433 (-)	NCBI

Sequence:

show sequence

CTTCCTTCCAAGCCAAAGGCCTTCCCTCCCAGCAGCAAAAGCAGTCAGAGGACGATGTTCCCTA
GTCTAATCTGCTCTTTCCTTCCTTCATTCATTCAATCAATCATTCACGCAGCTGGCCAGCAGAC
ACTGGATGACCACCCCTGGGCCAGGCCTTGTGGCAAATGCTACAGTAATGACCAGACACATCAC
ACCCGCCTTCTAGAAGCCCTCCCTCACAAACCGGATCAACTGCTATGATAAAGAAGAACCCACC
CAGGTAATCACTGCTTGCTCGGATCCCAGCAAATTCTAGATCCCAGAACTAGTGCTCTTAGAGC
CAAGGCCAGCCGATCCAAGTCTGGACTACTGCTCAGATGAGCCGAGCCTGAATTTGGGAGTGGT
TGTTACAGAGCATTACCCTGGCAATAACTGACTGATGCAGAGATGTAAATAGACATCACTGGTG
GAGCCCCCAGGAAAGCTCTTTAACAGAAGACAGACTCAGCTGGCAGGTTTCCCGTCTCCTTGAA
TGAAGACAGGCTCAATGCTTGGAGGGGTGAGAGGAGGCAGCCATCTTACAACCACAGGTCACAG
GAAGACACTAAACAAGGCCGTGTGGAAAGACAGAAGGAGCCTCCATCCCTCAGCACCACAGAGA
CATTGTATCAGCCTAGAAATGCCTAAATCTGAACTTCCTCTTACCTAAGAAAAATAAAACCTCA
ATTTGATTCAA

hide sequence

RefSeq Acc Id:

XR_930167

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	9	98,868,988 - 98,872,433 (-)	NCBI

Sequence:

show sequence

CTTCCTTCCAAGCCAAAGGCCTTCCCTCCCAGCAGCAAAAGCAGTCAGAGGACGATGTTCCCTA
GTCTAATCTGCTCTTTCCTTCCTTCATTCATTCAATCAATCATTCACGCAGCTGGCCAGCAGAC
ACTGGATGACCACCCCTGGGCCAGGCCTTGTGGCAAATGCTACAGTAATGACCAGACACATCAC
ACCCGCCTTCTAGAAGCCCTCCCTCACAAACCGGATCAACTGCTATGATAAAGTTTGGTTTCCT
TCTTTTCATGATTCACCATTAGAAGAACCCACCCAGGTAATCACTGCTTGCTCGGATCCCAGCA
AATTCTAGATCCCAGAACTAGTGCTCTTAGAGCCAAGGCCAGCCGATCCAAGTCTGGACTACTG
CTCAGATGAGCCGAGCCTGAATTTGGGAGTGGTTGTTACAGAGCATTACCCTGGCAATAACTGA
CTGATGCAGAGATGTAAATAGACATCACTGGTGGAGCCCCCAGGAAAGCTCTTTAACAGAAGAC
AGACTCAGCTGGCAGGTTTCCCGTCTCCTTGAATGAAGACAGGCTCAATGCTTGGAGGGGTGAG
AGGAGGCAGCCATCTTACAACCACAGGTCACAGGAAGACACTAAACAAGGCCGTGTGGAAAGAC
AGAAGGAGCCTCCATCCCTCAGCACCACAGAGACATTGTATCAGCCTAGAAATGCCTAAATCTG
AACTTCCTCTTACCTAAGAAAAATAAAACCTCAATTTGATTCAA

hide sequence

RefSeq Acc Id:

XR_930168

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	9	98,868,988 - 98,877,333 (-)	NCBI

Sequence:

show sequence

CTGGGAGGCAGAGTCGGCTCCAATAAAAAGAGCTGGCCAGCAGACACTGGATGACCACCCCTGG
GCCAGGCCTTGTGGCAAATGCTACAGTAATGACCAGACACATCACACCCGCCTTCTAGAAGCCC
TCCCTCACAAACCGGATCAACTGCTATGATAAAGAAGAACCCACCCAGGTAATCACTGCTTGCT
CGGATCCCAGCAAATTCTAGATCCCAGAACTAGTGCTCTTAGAGCCAAGGCCAGCCGATCCAAG
TCTGGACTACTGCTCAGATGAGCCGAGCCTGAATTTGGGAGTGGTTGTTACAGAGCATTACCCT
GGCAATAACTGACTGATGCAGAGATGTAAATAGACATCACTGGTGGAGCCCCCAGGAAAGCTCT
TTAACAGAAGACAGACTCAGCTGGCAGGTTTCCCGTCTCCTTGAATGAAGACAGGCTCAATGCT
TGGAGGGGTGAGAGGAGGCAGCCATCTTACAACCACAGGTCACAGGAAGACACTAAACAAGGCC
GTGTGGAAAGACAGAAGGAGCCTCCATCCCTCAGCACCACAGAGACATTGTATCAGCCTAGAAA
TGCCTAAATCTGAACTTCCTCTTACCTAAGAAAAATAAAACCTCAATTTGATTCAA

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
COSMIC	AL136084.1	COSMIC
Ensembl Genes	ENSG00000267026	Ensembl, ENTREZGENE
Ensembl Transcript	ENST00000585704	ENTREZGENE
	ENST00000587726	ENTREZGENE
GTEx	ENSG00000267026	GTEx
Human Proteome Map	AL136084.1	Human Proteome Map
NCBI Gene	LOC102724684	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2020-08-20	AL136084.1	novel transcript, antisense to GALNT12	AL136084.2	novel transcript, antisense to GALNT12	Symbol and/or name change	19259462	PROVISIONAL
2020-06-25	AL136084.2	novel transcript, antisense to GALNT12	LOC102724684	uncharacterized LOC102724684	Symbol and/or name change	19259462	PROVISIONAL
2020-06-18	LOC102724684	uncharacterized LOC102724684	AL136084.2	novel transcript, antisense to GALNT12	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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