AC007431.1 (novel transcript, antisense to MSI2) - Rat Genome Database

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Gene: AC007431.1 (novel transcript, antisense to MSI2) Homo sapiens
Analyze
Symbol: AC007431.1
Name: novel transcript, antisense to MSI2
RGD ID: 16563749
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: LOC101927539; uncharacterized LOC101927539
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381757,600,864 - 57,608,412 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1757,600,856 - 57,608,412 (-)EnsemblGRCh38hg38GRCh38
GRCh371755,678,225 - 55,685,773 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map17q22NCBI
HuRef1751,038,831 - 51,046,392 (-)NCBIHuRef
CHM1_11755,743,496 - 55,751,057 (-)NCBICHM1_1
T2T-CHM13v2.01758,476,229 - 58,483,777 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:12477932  


Genomics


Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 17q22(chr17:56958745-58171125)x1 copy number loss See cases [RCV000053434] Chr17:56958745..58171125 [GRCh38]
Chr17:55036106..56248486 [GRCh37]
Chr17:52391105..53603485 [NCBI36]
Chr17:17q22		 pathogenic
GRCh38/hg38 17q22(chr17:56683505-58084939)x1 copy number loss See cases [RCV000135409] Chr17:56683505..58084939 [GRCh38]
Chr17:54760866..56162300 [GRCh37]
Chr17:52115865..53517299 [NCBI36]
Chr17:17q22		 pathogenic
GRCh38/hg38 17q22-23.1(chr17:57418806-59735464)x1 copy number loss See cases [RCV000140211] Chr17:57418806..59735464 [GRCh38]
Chr17:55496167..57812825 [GRCh37]
Chr17:52851166..55167607 [NCBI36]
Chr17:17q22-23.1		 pathogenic
GRCh38/hg38 17q23.1-25.1(chr17:36449220-75053130)x3 copy number gain See cases [RCV000137437] Chr17:36449220..75053130 [GRCh38]
Chr17:57595736..73049225 [GRCh37]
Chr17:54950518..70560820 [NCBI36]
Chr17:17q23.1-25.1		 pathogenic
GRCh38/hg38 17q21.33-24.2(chr17:36449220-68170214)x3 copy number gain See cases [RCV000050957] Chr17:36449220..68170214 [GRCh38]
Chr17:48563237..65936105 [GRCh37]
Chr17:45918236..63677950 [NCBI36]
Chr17:17q21.33-24.2		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:163
Count of miRNA genes:161
Interacting mature miRNAs:163
Transcripts:ENST00000578662
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 11 12 4 81 12 6 15 10 340 8 1 9
Below cutoff 750 1024 848 151 663 65 1555 763 1678 133 552 691 89 292 1008 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000578662
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1757,600,856 - 57,608,412 (-)Ensembl
RefSeq Acc Id: NR_110807
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381757,600,864 - 57,608,412 (-)NCBI
T2T-CHM13v2.01758,476,229 - 58,483,777 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC AC007431.1 COSMIC
Ensembl Genes ENSG00000263499 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000578662 ENTREZGENE
GTEx ENSG00000263499 GTEx
Human Proteome Map AC007431.1 Human Proteome Map
NCBI Gene LOC101927539 ENTREZGENE
RNAcentral URS000075D1FE RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-25 AC007431.1  novel transcript, antisense to MSI2  LOC101927539  uncharacterized LOC101927539  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 LOC101927539  uncharacterized LOC101927539  AC007431.1  novel transcript, antisense to MSI2  Symbol and/or name change 5135510 APPROVED