SPICP3 (Spi-C transcription factor pseudogene 3) - Rat Genome Database

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Gene: SPICP3 (Spi-C transcription factor pseudogene 3) Homo sapiens
Analyze
Symbol: SPICP3
Name: Spi-C transcription factor pseudogene 3
RGD ID: 16563579
HGNC Page HGNC:56811
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: AC027763.1; LOC100128007; Spi-C transcription factor (Spi-1/PU.1 related) (SPIC) pseudogene; Spi-C transcription factor (Spi-1/PU.1 related) pseudogene
Related Functional Gene: SPIC  
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38176,927,417 - 6,928,262 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl176,927,472 - 6,928,191 (-)EnsemblGRCh38hg38GRCh38
GRCh37176,830,736 - 6,831,581 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map17p13.1NCBI
HuRef176,726,336 - 6,727,063 (-)NCBIHuRef
CHM1_1176,841,012 - 6,841,739 (-)NCBICHM1_1
T2T-CHM13v2.0176,828,118 - 6,828,963 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:81
Count of miRNA genes:76
Interacting mature miRNAs:77
Transcripts:ENST00000572223
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 105 103 9 3
Low 51 14 1160 420 387 305 888 30 758 133 588 963 122 52 386
Below cutoff 770 865 203 136 663 95 1577 622 2007 188 562 461 44 589 971 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000572223
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl176,927,472 - 6,928,191 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC SPICP3 COSMIC
Ensembl Genes ENSG00000262503 Ensembl, ENTREZGENE
GTEx ENSG00000262503 GTEx
HGNC ID HGNC:56811 ENTREZGENE
Human Proteome Map SPICP3 Human Proteome Map
NCBI Gene LOC100128007 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-04-24 SPICP3  Spi-C transcription factor pseudogene 3  AC027763.1  Spi-C transcription factor (Spi-1/PU.1 related) (SPIC) pseudogene  Symbol and/or name change 19259463 PROVISIONAL
2020-06-25 AC027763.1  Spi-C transcription factor (Spi-1/PU.1 related) (SPIC) pseudogene  LOC100128007  Spi-C transcription factor (Spi-1/PU.1 related) pseudogene  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 LOC100128007  Spi-C transcription factor (Spi-1/PU.1 related) pseudogene  AC027763.1  Spi-C transcription factor (Spi-1/PU.1 related) (SPIC) pseudogene  Symbol and/or name change 5135510 APPROVED